Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0996
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          32   0.50 
SB_13183| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)                  30   2.0  
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)                29   3.6  
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)                28   8.2  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   8.2  

>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +1

Query: 64  PQSPTPNSKTIFTTASSL----PITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAW 231
           P S +  S T +T  SSL    P   I       S+R+     S+ S  ++Y+    T W
Sbjct: 247 PASVSTQSCTAYTPTSSLYDSRPHPVITSNPNAASSRSTDYSMSRYSNNDAYDRATPT-W 305

Query: 232 STPTSYGSRLQRYRPGVLP 288
           S P S   RL   + GV+P
Sbjct: 306 SAPASQTPRLSHMKDGVVP 324


>SB_13183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 533 RTITTWPTGPTASKDLRPNGP-WQPAKYDNDVLFFMYNREYNEALVLSR 676
           +  TT  T P++SKD R +GP W         L F+ +  ++E  ++SR
Sbjct: 185 KAATTESTPPSSSKDARVSGPGWVLVSLGFGALMFISHSVFSEVSIVSR 233


>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
          Length = 776

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +3

Query: 36  FVASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVIT 185
           F ASL A + S SDS  EDDL    ++ + DH   K++ + + +K +  T
Sbjct: 548 FRASLAAQQDSTSDSSSEDDL----IMDEKDHPQGKARSLSDKQKCKNTT 593


>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 337 QARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 468
           Q  R +F++   +QQ+WQ   R+WQ Q   +SQLE +    E Q
Sbjct: 292 QQSRQQFEL---QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331


>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 533 RTITTWPTGPTASKDLRPNGPWQPAKYDNDVLFFMYNRE 649
           +T+ +WP+    +  LRPN P +   Y  ++L+  Y R+
Sbjct: 13  KTVHSWPSHGAQTDILRPNNPSKSDSY-KEILYRKYTRK 50


>SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)
          Length = 257

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +3

Query: 108 ILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQ 245
           I++A +D S ++S  IY+     +  NV+N+ +R   ++ M + ++
Sbjct: 84  IIIAGFDKS-DRSLTIYQALPGNLEGNVINRSVRKQVIDAMNFDFR 128


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 58  TKPQSPTPNSKTIFTTASSLPITTIP--LKRANRSTRTRRAKSSQ 186
           T P  PTP  K   +  +++P+T +P    +  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,783,380
Number of Sequences: 59808
Number of extensions: 377787
Number of successful extensions: 1543
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1542
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)