Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0996
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical ...    29   2.4  
U70850-2|AAB09123.1|  229|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z74030-16|CAI79165.1|  481|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z74030-15|CAI79164.1|  477|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z74030-6|CAA98444.2|  508|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL021492-1|CAA16377.1|  179|Caenorhabditis elegans Hypothetical ...    28   7.2  
U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U80848-1|AAB37990.3|  389|Caenorhabditis elegans Hypothetical
           protein T10H10.3 protein.
          Length = 389

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +3

Query: 48  LYANETSVSDSKLEDDLYNSILVADYDHSVEK--SKQIYE-DKKSEVITNVVNKLIRNNK 218
           +YA   S  D  LE DL+N   + +Y+H + K   +++++  KK E   NV+N+ I    
Sbjct: 318 MYAQSDSSLDHLLEWDLFNFEQLTEYEHLMMKLYKQEVFDIVKKYEKKRNVLNREIHRRD 377

Query: 219 MN 224
           ++
Sbjct: 378 VS 379


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
 Frame = +1

Query: 10  KPFKLFCVFSW------RLCMPTKPQ-SPTPNSKTIFTTASSLPITTIPLKRANRSTRTR 168
           KP+ + C F+        +C P+KP+ S T  + T  TT ++ P TT        +T T 
Sbjct: 59  KPYNIDCPFAIPPITFNAVCDPSKPKPSTTTTTTTTPTTTTTTPTTTTTTPTTTTTTPT- 117

Query: 169 RAKSSQMS*TNSYETTR*TAWSTP 240
              ++  + T +  TT  T  STP
Sbjct: 118 -TTTTTPTTTTTTPTTTTTTRSTP 140


>Z66561-1|CAA91454.1|  635|Caenorhabditis elegans Hypothetical
           protein F08G12.1 protein.
          Length = 635

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 39  VASLYANETSVSDSKLEDDLYNSILVADYDHSVE---KSKQIYEDKKSEV 179
           +  L  N++ +  S  E D Y     ADYD  +E   + ++ Y DKKSE+
Sbjct: 250 IRQLETNKSEIVSSYHELDCYQETPEADYDTFIELVNQKRREYADKKSEM 299


>AC084160-2|AAK39373.1|  376|Caenorhabditis elegans Hypothetical
           protein Y73B3B.1 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 60  ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 173
           + ++SD K+  DL +SI     DHS+ KS +  EDK S
Sbjct: 276 DPAISDGKVVLDLIDSIKPNVIDHSLVKSGKSNEDKMS 313


>U70850-2|AAB09123.1|  229|Caenorhabditis elegans Hypothetical
           protein F28F9.2 protein.
          Length = 229

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 643 IVHEEQNVVVVLSGLPGSIGP*ILRR 566
           +VH  Q V  VL+GLPGS GP  L R
Sbjct: 2   VVHRYQ-VTQVLTGLPGSTGPPTLER 26


>Z74030-16|CAI79165.1|  481|Caenorhabditis elegans Hypothetical
           protein D1054.9e protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 52  MPTKPQSPTPNSKTIFTTASSLPITTIPLKR-ANRSTRTRRAKSSQMS*TNSYETTR*TA 228
           +PT+P +   +S T  +T   LPI     +R    ++ +    +++ S T +  TT  T 
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTTE 294

Query: 229 WSTPTSYGSRLQRYRPGVLP 288
             T T+ GS  Q    G  P
Sbjct: 295 EPTTTTKGSEEQLGGKGPSP 314


>Z74030-15|CAI79164.1|  477|Caenorhabditis elegans Hypothetical
           protein D1054.9d protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 52  MPTKPQSPTPNSKTIFTTASSLPITTIPLKR-ANRSTRTRRAKSSQMS*TNSYETTR*TA 228
           +PT+P +   +S T  +T   LPI     +R    ++ +    +++ S T +  TT  T 
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTTE 294

Query: 229 WSTPTSYGSRLQRYRPGVLP 288
             T T+ GS  Q    G  P
Sbjct: 295 EPTTTTKGSEEQLGGKGPSP 314


>Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical
           protein D1054.9b protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 52  MPTKPQSPTPNSKTIFTTASSLPITTIPLKR-ANRSTRTRRAKSSQMS*TNSYETTR*TA 228
           +PT+P +   +S T  +T   LPI     +R    ++ +    +++ S T +  TT  T 
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTTE 294

Query: 229 WSTPTSYGSRLQRYRPGVLP 288
             T T+ GS  Q    G  P
Sbjct: 295 EPTTTTKGSEEQLGGKGPSP 314


>Z74030-6|CAA98444.2|  508|Caenorhabditis elegans Hypothetical
           protein D1054.9a protein.
          Length = 508

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 52  MPTKPQSPTPNSKTIFTTASSLPITTIPLKR-ANRSTRTRRAKSSQMS*TNSYETTR*TA 228
           +PT+P +   +S T  +T   LPI     +R    ++ +    +++ S T +  TT  T 
Sbjct: 235 IPTEPSTSVSSSSTSASTTPELPIIEETEEREVTEASTSTTTTTAEPSTTATTTTTTTTE 294

Query: 229 WSTPTSYGSRLQRYRPGVLP 288
             T T+ GS  Q    G  P
Sbjct: 295 EPTTTTKGSEEQLGGKGPSP 314


>Z70682-6|CAH60781.2|  401|Caenorhabditis elegans Hypothetical
           protein F08G5.7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 19  KLFCVFSWRLCMPTKPQSPTPN-SKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS* 195
           ++ C +  R    T   +PT   + TI T+ +++  TT+   +A  +T+T  + ++    
Sbjct: 195 QIICKYCPRETTSTTTVTPTTTKAATIKTSTTTVTPTTVTTTKAPTTTKTSTSTTTPKFT 254

Query: 196 TNSYETTR*TAWSTPTS 246
           T + +TT+    ++PTS
Sbjct: 255 TTTIQTTK-KITTSPTS 270


>AC024743-1|AAK68402.2|  177|Caenorhabditis elegans Hypothetical
           protein Y104H12BR.1 protein.
          Length = 177

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 60  ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKS 173
           + ++SD K+  DL ++I     DHS+ KS +  EDK S
Sbjct: 108 DPAISDGKVVLDLIDAIKPNVIDHSLVKSGKSNEDKMS 145


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 31  VFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLK 141
           V + R  +PT P+   P  +T  T AS L  T +P+K
Sbjct: 647 VSTQRAPVPTTPRPTAPAVQTTTTRASRLETTRVPVK 683


>Z81560-7|CAB76737.2|  188|Caenorhabditis elegans Hypothetical
           protein K02E2.8a protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 49  CMPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRT 165
           C+PT+  +P        TT  S P TT+P+   N  + T
Sbjct: 14  CIPTQFVTPLNPGTITTTTTISAPTTTVPITTTNPVSTT 52


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
 Frame = +1

Query: 34  FSWRLC--MP--TKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TN 201
           + W+ C  +P  TKP + TP +    TT +++P TT     +  ST T  +  +  + T+
Sbjct: 246 YEWKKCGLVPETTKPTTTTPTT----TTTTTIPSTT----SSTTSTSTTTSVVTTTTVTS 297

Query: 202 SYETTR*TAWSTPTS 246
           + E T  T+ STPT+
Sbjct: 298 TTEPT--TSTSTPTT 310


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 64  PQSPTPNSKTIFTTAS-SLPITTIPLKRANRSTRTR 168
           PQ P P  +T  T    +LP TT+P+   N++ RT+
Sbjct: 762 PQVPLPVVQTTQTAPKPTLPPTTLPVLTTNKTPRTK 797


>AL021492-1|CAA16377.1|  179|Caenorhabditis elegans Hypothetical
           protein Y45F10D.2 protein.
          Length = 179

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 58  TKPQSPTPNSKTIFT-TASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*TAWS 234
           T P S   +S +  T T +    +TIP+ + + ++   R K   +S T +  +   T+  
Sbjct: 80  TPPASSASSSASSMTPTGNGAQASTIPMNQGSSTSMPVRQKRQAVSTTTTTASPMSTSSP 139

Query: 235 TPTSYGSRLQRY 270
           TP+   S  Q Y
Sbjct: 140 TPSQQPSTTQPY 151


>U46675-6|AAB52642.1|  111|Caenorhabditis elegans Hypothetical
           protein F35A5.2 protein.
          Length = 111

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 608 KYDNDVLFFMYNREYNEALVLS 673
           KY+N    F YNREYN+  V S
Sbjct: 29  KYNNPPFCFAYNREYNDNDVTS 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,760
Number of Sequences: 27780
Number of extensions: 268258
Number of successful extensions: 1153
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)