Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0996
         (691 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +2

Query: 275 RECFPVEFRLIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKDKTSPKVS 436
           R    +   L   E  IK+ ++     +    EN + G    GDG  + SP+ S
Sbjct: 298 RRRIEIAHALCLTERQIKIWFQNR--RMKWKKENKSKGTPGSGDGDTEISPQTS 349


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 48   LYANETSVSDSKLEDDLYNSILVADY 125
            L  NET  SD   +  +  SI+V+DY
Sbjct: 969  LNVNETVCSDYFSQGGVIESIMVSDY 994


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 76  TPNSKTIFTTASSLPITTIP 135
           TP +  I  + +++PIT++P
Sbjct: 841 TPTTSVISMSGTTVPITSLP 860


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,348
Number of Sequences: 438
Number of extensions: 3517
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)