Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0996
(691 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 33 0.14
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890... 32 0.31
At3g27710.1 68416.m03460 zinc finger protein-related contains si... 32 0.41
At3g27720.1 68416.m03461 zinc finger protein-related contains Pf... 31 0.95
At4g39510.1 68417.m05587 cytochrome P450 family protein contains... 30 1.7
At4g04190.2 68417.m00595 expressed protein 30 1.7
At4g04190.1 68417.m00594 expressed protein 30 1.7
At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3... 30 1.7
At3g59690.1 68416.m06660 calmodulin-binding family protein simil... 29 3.8
At5g63450.1 68418.m07965 cytochrome P450, putative 28 5.1
At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3... 28 6.7
At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3... 28 6.7
At4g13040.1 68417.m02035 AP2 domain-containing transcription fac... 28 6.7
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|... 27 8.9
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|... 27 8.9
At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative / poly... 27 8.9
At4g00620.1 68417.m00086 tetrahydrofolate dehydrogenase/cyclohyd... 27 8.9
At3g13540.1 68416.m01702 myb family transcription factor contain... 27 8.9
At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3... 27 8.9
At1g35490.1 68414.m04403 bZIP family transcription factor 27 8.9
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +3
Query: 3 KMKT-VQVILCLFVASLYANETSVSDSKLEDDLYNSI--LVADYDHSVEKSKQIYEDKKS 173
++KT VQ I C+ A+ET++ SK DDL I L+ D + +E +Q+ E+ S
Sbjct: 714 EVKTMVQAIACVSQREAEAHETAIKLSKENDDLRQKIKVLIEDNNKLIELYEQVAEENSS 773
Query: 174 EVITNVVNKLIRNN 215
+ NN
Sbjct: 774 RAWGKIETDSSSNN 787
>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
At1g39430, At2g10460, At4g03640, At5g35250
Length = 509
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 3 KMKTVQVILCLFVASLYANETSVSDSKL-EDDLYNSILVADYDHSVEKSKQIYEDKKSEV 179
K KT Q +LC+ +++ S + +++ D++ + I+ DYD V+ S I ++ S +
Sbjct: 398 KGKTFQFLLCVQRENIFGGYDSFTVARVYTDNIADEIVQEDYDAYVDPSSLISIEQDSLM 457
Query: 180 ITNVVN 197
+TN V+
Sbjct: 458 LTNGVD 463
>At3g27710.1 68416.m03460 zinc finger protein-related contains
similarity to zinc finger proteins and Pfam domain,
PF01485: IBR domain
Length = 537
Score = 31.9 bits (69), Expect = 0.41
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +3
Query: 51 YANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 230
Y + + KLED L SIL +S K ++++ K+ +T+ VN+L + ++
Sbjct: 353 YRYKAHIDSLKLEDKLRKSILEKAVSNSETKDQKVF--KEYSWVTDAVNRLFISRRILSQ 410
Query: 231 EYAYQLWL 254
Y + ++
Sbjct: 411 SYPFAFYM 418
>At3g27720.1 68416.m03461 zinc finger protein-related contains
Pfam:PF01485 IBR domain
Length = 493
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +3
Query: 51 YANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 230
Y + + KLED L SIL +S K ++++ K+ I + VN+L R+ ++
Sbjct: 313 YRYKAHIDSLKLEDKLKKSILKKAVLNSETKDQKVF--KEYSWIIDAVNRLFRSRRILSY 370
Query: 231 EYAYQLWL 254
Y + ++
Sbjct: 371 SYPFVFYM 378
>At4g39510.1 68417.m05587 cytochrome P450 family protein contains
Pfam PF00067: Cytochrome P450; similar to Cytochrome
P450 86A2 (SP:O23066) [Arabidopsis thaliana]
Length = 508
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 317 NNIKLMYKRDGLALTLDDENSNDGRLAYG-DGKDKTSPKVSWKFVPLWENNKVYFKI 484
++IKL + L DD+ D LA+ G+D TS +SW F L EN +V KI
Sbjct: 281 SHIKLDTTKYELLNPSDDKFLRDTILAFNLAGRDTTSSALSWFFWLLSENPQVVTKI 337
>At4g04190.2 68417.m00595 expressed protein
Length = 184
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 436 LEVRSSVGEQQ-GLLQDCEHSA*SVLTLAVQTTPNHNHM--AYGANSVEGFKAQWTLAAR 606
L VR E + GL E + + L + T H+ A GA +EGF+ +W+L R
Sbjct: 81 LRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSLHGR 140
>At4g04190.1 68417.m00594 expressed protein
Length = 184
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 436 LEVRSSVGEQQ-GLLQDCEHSA*SVLTLAVQTTPNHNHM--AYGANSVEGFKAQWTLAAR 606
L VR E + GL E + + L + T H+ A GA +EGF+ +W+L R
Sbjct: 81 LRVRLQESEHKLGLSMPIELAKERITQLEAEATSFERHLILASGAEGIEGFRRRWSLHGR 140
>At2g17260.1 68415.m01993 glutamate receptor family protein (GLR3.1)
(GLR2) identical to putative glutamate receptor GLR2
[Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant
glutamate receptor family, PMID:11379626
Length = 951
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 344 DGLALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 448
D +AL DD+NS +G A GD ++ K+S+K V
Sbjct: 194 DVVALYNDDDNSRNGVTALGDELEERRCKISYKAV 228
>At3g59690.1 68416.m06660 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 517
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = +3
Query: 60 ETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYA 239
E + K + L +S + D+D SV + +++K + ++ +I+ + Y+
Sbjct: 236 ENRARNDKDDTKLVSSRMSDDWDDSV-----LTKEEKDVRLHRKIDAMIKRERSMAYAYS 290
Query: 240 YQLWLKAPK 266
+QLW +PK
Sbjct: 291 HQLWKNSPK 299
>At5g63450.1 68418.m07965 cytochrome P450, putative
Length = 510
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 407 GKDKTSPKVSWKFVPLWENNKVYFKIVNTQRNQ 505
G+D TS ++W F L +N+ V KI++ RN+
Sbjct: 306 GRDTTSAAMTWLFWLLSQNDDVETKILDELRNK 338
>At4g35290.2 68417.m05015 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 350 LALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 448
+AL DD+NS +G A GD + K+S+K V
Sbjct: 166 IALYNDDDNSRNGITALGDELEGRRCKISYKAV 198
>At4g35290.1 68417.m05014 glutamate receptor family protein (GLR3.2)
(GLUR2) identical to putative glutamate receptor
like-protein GLUR2 [Arabidopsis thaliana]
gi|13160471|gb|AAK13248; plant glutamate receptor
family, PMID:11379626
Length = 912
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 350 LALTLDDENSNDGRLAYGDGKDKTSPKVSWKFV 448
+AL DD+NS +G A GD + K+S+K V
Sbjct: 166 IALYNDDDNSRNGITALGDELEGRRCKISYKAV 198
>At4g13040.1 68417.m02035 AP2 domain-containing transcription factor
family protein contains Pfam profile PF00847: AP2 domain
Length = 226
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 73 PTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSY 207
P PN++ + + +TT+ +++ R+RR +S M + Y
Sbjct: 36 PNPNARAAYNPGPAETVTTVIVEKKAIEERSRRTRSKHMHFRSDY 80
>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 435
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +1
Query: 61 KPQSPTPNSKTIFTTASSLPITTI------PLKRANRSTRTRRAKSSQ 186
K +SP P+S T T A+S P +TI PL + R RT+R + +Q
Sbjct: 21 KVKSPPPSSSTTTTRATS-PSSTISESSNSPLAISTRKPRTQRKRPNQ 67
>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
gi|13991645|gb|AF359387.1|AF359387
Length = 424
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Frame = +1
Query: 61 KPQSPTPNSKTIFTTASSLPITTI------PLKRANRSTRTRRAKSSQ 186
K +SP P+S T T A+S P +TI PL + R RT+R + +Q
Sbjct: 21 KVKSPPPSSSTTTTRATS-PSSTISESSNSPLAISTRKPRTQRKRPNQ 67
>At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative /
polyphosphoinositide-binding protein, putative similar
to polyphosphoinositide binding protein SEC14 homolog
Ssh1p (GI:2739044) {Glycine max}
Length = 341
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 314 ENNIKLMYKRDGLALTLDDENSNDGRLAYGD 406
E+ + R+GLA+++DD S+ LA GD
Sbjct: 310 ESELHKFENRNGLAVSIDDRKSSHETLANGD 340
>At4g00620.1 68417.m00086 tetrahydrofolate
dehydrogenase/cyclohydrolase, putative similar to
SP|P07245 C-1-tetrahydrofolate synthase, cytoplasmic
(C1-THF synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
synthetase (EC 6.3.4.3)] {Saccharomyces cerevisiae};
contains Pfam profiles PF02882: Tetrahydrofolate
dehydrogenase/cyclohydrolase, NAD(P)-binding domain,
PF00763: Tetrahydrofolate dehydrogenase/cyclohydrolase,
catalytic domain
Length = 360
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Frame = -1
Query: 409 AIAVGKSAIV---AVLIVQRQSETVALVH 332
A+ +G+S IV A L++QR+ TV+++H
Sbjct: 230 AVVIGRSNIVGMPAALLLQREDATVSIIH 258
>At3g13540.1 68416.m01702 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 249
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 39 VASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVN 197
++S + ++T+V+ + D NSI V +H E Y+DK S + +++N
Sbjct: 163 ISSSHTDDTTVNGG--DGDSKNSINVFGGEHGYEDFGFCYDDKFSSFLNSLIN 213
>At2g32390.1 68415.m03958 glutamate receptor family protein (GLR3.5)
plant glutamate receptor family, PMID:11379626
Length = 895
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 341 RDGLALTLDDENSNDGRLAYGDGKDKTSPKVSWK--FVPLWENNKV 472
R+ +A+ +DDE +G GD K K+S+K F P +N+ +
Sbjct: 123 REVVAIFVDDEYGRNGISVLGDALAKKRAKISYKAAFPPGADNSSI 168
>At1g35490.1 68414.m04403 bZIP family transcription factor
Length = 300
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +1
Query: 46 LCMPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETTR*T 225
L P P+ + ++ TA+ L +P K + + + + ++ + +NSYE
Sbjct: 61 LSEPASPKINKGHRRSASDTAAYLNSALMPSKENHVAGSSWQFQNYDLWQSNSYEQHNKL 120
Query: 226 AWSTPTSYGSRLQR 267
W T+ G+ +QR
Sbjct: 121 GWDFSTANGTNIQR 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,885,765
Number of Sequences: 28952
Number of extensions: 247761
Number of successful extensions: 892
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -