Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0995
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    63   3e-11
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     31   0.099
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.9  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   6.5  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   8.6  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 30/55 (54%), Positives = 39/55 (70%)
 Frame = +1

Query: 91  AFLDCKTIILGKSHYLLYVLATXMQPRWLVTLDENLQPLNVSXRVGQAVDVIGKA 255
           A LD  T +L  SH+LLY +   ++PR L+TL E+ Q L VS RVGQAVDV+G+A
Sbjct: 783 AMLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRVGQAVDVVGQA 837



 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 28/53 (52%), Positives = 35/53 (66%)
 Frame = +3

Query: 249 KSGTPKTIAGXHTHTMXVLLSFGERAELAXDEYIPLSPIMEGFVILKKNEDSV 407
           ++G PK I G  THT  VLL   ERAELA + Y PL+  +EG VILKKN + +
Sbjct: 836 QAGRPKVITGWVTHTTPVLLHHNERAELATEAYTPLTS-LEGIVILKKNTEDI 887


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 31.1 bits (67), Expect = 0.099
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 130 HYLLYVLATXMQPRWLVTLDENLQPLN 210
           H++LYV +  +QP WL   D N+ P N
Sbjct: 333 HFVLYVPSPQIQPLWLENEDSNIIPTN 359


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +3

Query: 45  CSIQPALAGLL---VVTHRLPRLQD-HNPRQIPLLAVRIGDXDATPLA 176
           C+    + G+L   + + R+ RL   H P +IP   V +   D TPL+
Sbjct: 156 CNSSKRVVGMLRRFLPSSRMVRLSKAHQPLRIPTTGVSLDSADLTPLS 203


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 291 TMXVLLSFGERAELAXDEYIPLSPIMEGFVILKKNEDSVMASVQ 422
           ++  LLSF   +  +   Y+ LSPI+ GF+ L+ N  S+  + Q
Sbjct: 629 SIPALLSF-RSSNFSKRPYV-LSPILNGFLKLQDNPSSIYFAKQ 670


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 198 KIFVEGDQPAGLHRSRQYVQQVVGFAEDY 112
           + +++G  P+  HR ++ +QQ+ G  E +
Sbjct: 153 RFYLDGCDPSVAHRVKKQIQQLGGHVETF 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,725
Number of Sequences: 5004
Number of extensions: 29744
Number of successful extensions: 64
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)