Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0995
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956... 78 4e-15
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 77 8e-15
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 60 1e-09
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 29 1.6
03_05_0662 + 26540625-26541152 29 2.8
04_03_0958 - 21241230-21241327,21241693-21241893,21241989-212421... 28 5.0
02_02_0193 + 7649488-7649556,7651372-7651833,7652117-7652145,765... 28 5.0
08_02_1352 - 26325081-26325150,26325315-26325391,26326799-263269... 27 6.5
01_06_0313 - 28399636-28400151 27 6.5
09_02_0489 - 9847903-9848081,9848916-9849107,9849195-9849276,984... 27 8.7
06_03_0518 - 21685950-21686221,21686768-21686882 27 8.7
01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028 27 8.7
>09_02_0460 +
9567656-9567766,9567849-9567949,9568527-9568647,
9568733-9568792,9569022-9569089,9569469-9569535,
9569586-9569666,9570152-9570217,9570372-9570410,
9570527-9570609,9570712-9570823,9570902-9570982,
9571132-9571290,9571397-9571504,9571570-9571674,
9571765-9571905,9572007-9572147,9572205-9572426,
9573617-9573730,9573830-9574045,9574373-9574432,
9574513-9574626,9574735-9574820,9574904-9575012,
9575099-9575277,9575357-9575429
Length = 938
Score = 78.2 bits (184), Expect = 4e-15
Identities = 37/57 (64%), Positives = 47/57 (82%)
Frame = +1
Query: 85 LTAFLDCKTIILGKSHYLLYVLATXMQPRWLVTLDENLQPLNVSXRVGQAVDVIGKA 255
L A LD K+IILGK HY+LY+LA MQPR L+T+DE+L+PL+V VGQAVDV+G+A
Sbjct: 829 LHACLDMKSIILGKYHYMLYILALAMQPRMLLTVDEDLKPLSVPVCVGQAVDVVGQA 885
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/51 (56%), Positives = 41/51 (80%)
Frame = +3
Query: 249 KSGTPKTIAGXHTHTMXVLLSFGERAELAXDEYIPLSPIMEGFVILKKNED 401
++G PKTI G TH+ VLL+ GERAELA ++Y+PL+P++EGFVIL+ N +
Sbjct: 884 QAGRPKTITGFQTHSTPVLLAAGERAELATEKYLPLTPVLEGFVILRNNPE 934
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 77.0 bits (181), Expect = 8e-15
Identities = 35/57 (61%), Positives = 46/57 (80%)
Frame = +1
Query: 85 LTAFLDCKTIILGKSHYLLYVLATXMQPRWLVTLDENLQPLNVSXRVGQAVDVIGKA 255
L A LD K+ ILGK HY+LY++ MQPR L+T+DE+L+PL+V RVGQAVDV+G+A
Sbjct: 789 LHACLDMKSTILGKYHYILYIIVLAMQPRMLLTVDEDLKPLSVPVRVGQAVDVVGQA 845
Score = 70.1 bits (164), Expect = 9e-13
Identities = 31/51 (60%), Positives = 41/51 (80%)
Frame = +3
Query: 249 KSGTPKTIAGXHTHTMXVLLSFGERAELAXDEYIPLSPIMEGFVILKKNED 401
++G PKTI G TH+ VLL+ GERAELA ++YIPL+ ++EGFVILKKN +
Sbjct: 844 QAGRPKTITGFQTHSTPVLLAAGERAELATEKYIPLTSVLEGFVILKKNPE 894
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/43 (62%), Positives = 35/43 (81%)
Frame = +1
Query: 85 LTAFLDCKTIILGKSHYLLYVLATXMQPRWLVTLDENLQPLNV 213
L A LD K+IILGK HY+LY+L MQPR L+T+DE+L+PL+V
Sbjct: 792 LHACLDMKSIILGKYHYMLYILTLAMQPRMLLTVDEDLKPLSV 834
Score = 35.9 bits (79), Expect = 0.019
Identities = 13/37 (35%), Positives = 26/37 (70%)
Frame = +3
Query: 291 TMXVLLSFGERAELAXDEYIPLSPIMEGFVILKKNED 401
++ ++ ++ L+ Y+PL+P++EGFVIL+KN +
Sbjct: 833 SVPLIFAYAYAYALSMCRYLPLTPVLEGFVILRKNPE 869
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 162 ATPLAGHPRRKSSAL-ERXXACGTGCGCYRKSGTPKTIAG 278
AT AGHP A+ + ACG C + + P+ +AG
Sbjct: 69 ATRFAGHPDLHLFAVFDGHGACGAACAGFARDALPRLLAG 108
>03_05_0662 + 26540625-26541152
Length = 175
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 140 CTYWRLRCNPAGWSPSTKIFSP*TXACVWD 229
C YW L+ P WS S + +P WD
Sbjct: 17 CKYWLLKTEPGEWSWSDQARAPGGGVAPWD 46
>04_03_0958 -
21241230-21241327,21241693-21241893,21241989-21242110,
21242462-21242536,21242626-21242714,21242808-21242888,
21243552-21243674
Length = 262
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 150 GDXDATPLAGHPRRKSSALERXXACGTGCGCYRKSGTP 263
G+ +A P+ GH + R CG G G R G P
Sbjct: 220 GEPNAPPMQGHEGGRGRGRGRGRGCGRGRGGGRGRGPP 257
>02_02_0193 +
7649488-7649556,7651372-7651833,7652117-7652145,
7653284-7653391,7653544-7653708,7653882-7653987,
7654105-7654731
Length = 521
Score = 27.9 bits (59), Expect = 5.0
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Frame = -1
Query: 208 SRAEDFRRG*PASG---VASXSPIR-TASSGICRGLWSCSRGRR*VTTSRP--ASAGWIE 47
SR R G P G + +P R TA++ RG + G V P A +GW+E
Sbjct: 389 SRRRSPRHGMPTVGGVVLQLVAPRRATAAAAEVRG--AGEDGEAAVVGEEPEGAGSGWVE 446
Query: 46 QA--PXARARDTGSPRA 2
QA P +A GSPRA
Sbjct: 447 QAAEPRRKAGRRGSPRA 463
>08_02_1352 -
26325081-26325150,26325315-26325391,26326799-26326956,
26327433-26327518,26327635-26328317
Length = 357
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 202 PLNVSXRVGQAVDVIGKAVHRRQ*XVXTLTRCXCCCPSXSEQNWXLT 342
P ++ RV A D + KA+ TRC C Q+W +T
Sbjct: 51 PFAMNYRV-IAADAVSKAIAIAAMAAWARTRCGCAAAKAGAQSWSIT 96
>01_06_0313 - 28399636-28400151
Length = 171
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/80 (28%), Positives = 29/80 (36%)
Frame = +3
Query: 33 AXGACSIQPALAGLLVVTHRLPRLQDHNPRQIPLLAVRIGDXDATPLAGHPRRKSSALER 212
A G A AG R PR++ Q L+A R P PRR S +
Sbjct: 79 ARGGSKCMHADAGAAPRHRRGPRVRQLVQVQAQLVAARTRRTQQRPA---PRRPSDGESQ 135
Query: 213 XXACGTGCGCYRKSGTPKTI 272
+ G C C TP T+
Sbjct: 136 QPSSGPRCLCILLRATPSTV 155
>09_02_0489 -
9847903-9848081,9848916-9849107,9849195-9849276,
9849529-9849722,9851009-9851601,9851827-9851870
Length = 427
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 144 RIGDXDATPLAGHPRRKSSALERXXACGTGCGCYRKSGT 260
R D D A +++ S R A GCGC R+S T
Sbjct: 74 RRDDDDGCGDAVDQQQRQSRRTRRGAAAAGCGCRRRSPT 112
>06_03_0518 - 21685950-21686221,21686768-21686882
Length = 128
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 210 RXXACGTGCGCYRKSGTPKTI 272
R A G GC C R SG P +
Sbjct: 6 RVLAAGAGCACLRASGRPGAV 26
>01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028
Length = 482
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 144 RIGDXDATPLAGHPRRKSSALERXXACGTGCGCY 245
+I D + + HPR +S + R A GTG G +
Sbjct: 335 QIHDLHSKLILDHPRGRSQQIHRLIASGTGNGIF 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,561,913
Number of Sequences: 37544
Number of extensions: 222130
Number of successful extensions: 607
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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