Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0995
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    70   8e-13
AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z70685-1|CAA94607.1|  522|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z19122-1|CAA79529.1|  522|Caenorhabditis elegans hypothetical po...    27   7.8  
L15201-1|AAA27946.2|  273|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
            regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 70.1 bits (164), Expect = 8e-13
 Identities = 32/51 (62%), Positives = 39/51 (76%)
 Frame = +3

Query: 249  KSGTPKTIAGXHTHTMXVLLSFGERAELAXDEYIPLSPIMEGFVILKKNED 401
            ++G PKTI G  THT  VLL+ GERAELA DEY+ ++P +EG VILKKN D
Sbjct: 921  QAGKPKTITGFQTHTTPVLLAHGERAELANDEYLSVTPHLEGLVILKKNPD 971



 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
 Frame = +1

Query: 91   AFLDCK-TIILGKSHYLLYVLATXMQPRWLVTLDE------NLQPLNVSXRVGQAVDVIG 249
            +FLD   TI+  + HYLLY L   MQPR L TL E      +L+ LNVS RVGQAVDV+ 
Sbjct: 861  SFLDANNTILNNRQHYLLYTLVLAMQPRMLTTLVEDEMKPGSLKQLNVSVRVGQAVDVVA 920

Query: 250  KA 255
            +A
Sbjct: 921  QA 922


>AF099915-9|AAC68774.1|  108|Caenorhabditis elegans Hypothetical
           protein E02H9.9 protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 152 RLRCNPAGWSPST---KIFSP*TXACVWDRLWMLSEKRYTEDNSXXPHSHDAGAAVLR 316
           R+RC  +G+ PST   +IFS      + +  WM+S +  T D     +  D GA +L+
Sbjct: 3   RIRCELSGFGPSTFFSEIFSKEVDDKIGETDWMVSRRPNTYD--VIGNDTDDGADILQ 58


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 137 CCTYWRLRCNPAGWSPS 187
           CC  W   C P G+SPS
Sbjct: 165 CCRAWHGSCAPKGYSPS 181


>Z70685-1|CAA94607.1|  522|Caenorhabditis elegans Hypothetical
           protein R07D5.1 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 177 GHPRRKSSALERXXACGTGCGCY 245
           GH R   S L+    CG  CGCY
Sbjct: 295 GHSRSCFSNLQLGANCGRHCGCY 317


>Z19122-1|CAA79529.1|  522|Caenorhabditis elegans hypothetical
           polypeptide protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 177 GHPRRKSSALERXXACGTGCGCY 245
           GH R   S L+    CG  CGCY
Sbjct: 295 GHSRSCFSNLQLGANCGRHCGCY 317


>L15201-1|AAA27946.2|  273|Caenorhabditis elegans Hypothetical
           protein C08C3.2 protein.
          Length = 273

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 392 FLENHESLHYRREWYVLV 339
           F ++ E +HY  EW++LV
Sbjct: 25  FFKSPEEIHYNAEWFILV 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,492,946
Number of Sequences: 27780
Number of extensions: 171786
Number of successful extensions: 430
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)