Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0995
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.7  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 125 LPRIMVLQSRKAVSHDE 75
           LPR+  L++ +A++HD+
Sbjct: 430 LPRVQWLKNDEALNHDQ 446


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 224 WDRLWML 244
           WDRLW+L
Sbjct: 133 WDRLWVL 139


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 380 DSQEKRG*RHGLCSIKMYLSCNL 448
           D  +K+G   G  SI  Y  C L
Sbjct: 779 DKSKKQGSSAGTSSITKYTGCEL 801


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 360 ARVVCTRQXPVLLAXRRTAAPASCE 286
           A++V TRQ   +++ +R    A C+
Sbjct: 402 AQIVETRQQQHIMSEKRIMGEADCD 426


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 389 LENHESLHYRRE 354
           L NH+S+++RR+
Sbjct: 417 LNNHKSIYHRRQ 428


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 273 AGXHTHTMXVLLSFGER 323
           AG H+HT+  L + G R
Sbjct: 255 AGLHSHTIIYLSAKGHR 271


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 380 DSQEKRG*RHGLCSIKMYLSCNL 448
           D  +K+G   G  SI  Y  C L
Sbjct: 869 DKSKKQGSSAGTSSITKYTGCEL 891


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,842
Number of Sequences: 438
Number of extensions: 2089
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)