Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0995
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2 (R...    78   3e-15
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta...    75   3e-14
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter...    28   3.1  
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi...    27   5.5  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   5.5  
At2g32640.2 68415.m03985 expressed protein                             27   5.5  
At2g32640.1 68415.m03984 expressed protein                             27   5.5  
At5g53840.1 68418.m06690 F-box family protein (FBL13) contains F...    27   7.3  
At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   7.3  
At4g31160.1 68417.m04423 transducin family protein / WD-40 repea...    27   9.6  
At1g53345.1 68414.m06047 expressed protein                             27   9.6  

>At2g20580.1 68415.m02404 26S proteasome regulatory subunit S2
           (RPN1) contains an APC-complex (cyclosome) and
           proteasome component repeat ( PS50248)
          Length = 891

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 37/57 (64%), Positives = 45/57 (78%)
 Frame = +1

Query: 85  LTAFLDCKTIILGKSHYLLYVLATXMQPRWLVTLDENLQPLNVSXRVGQAVDVIGKA 255
           L A LD K IILGK HY+LY L   MQPR ++T+DENL+PL+V  RVGQAVDV+G+A
Sbjct: 782 LHACLDMKPIILGKYHYVLYFLVLAMQPRMMLTVDENLKPLSVPVRVGQAVDVVGQA 838



 Score = 76.2 bits (179), Expect = 1e-14
 Identities = 34/51 (66%), Positives = 42/51 (82%)
 Frame = +3

Query: 249 KSGTPKTIAGXHTHTMXVLLSFGERAELAXDEYIPLSPIMEGFVILKKNED 401
           ++G PKTI G  TH+  VLL+ GERAELA D+YIPLSPI+EGF+ILK+N D
Sbjct: 837 QAGRPKTITGFQTHSTPVLLAAGERAELATDKYIPLSPILEGFIILKENPD 887


>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
            contains Pfam domain PF01851: Proteasome/cyclosome repeat
          Length = 1103

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/57 (59%), Positives = 46/57 (80%)
 Frame = +1

Query: 85   LTAFLDCKTIILGKSHYLLYVLATXMQPRWLVTLDENLQPLNVSXRVGQAVDVIGKA 255
            L A LD K+IILGK HY+LY L   MQPR ++T+D++L+P++V  RVGQAVDV+G+A
Sbjct: 885  LHACLDMKSIILGKYHYVLYFLVLAMQPRMMLTVDQSLKPISVPVRVGQAVDVVGQA 941



 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 22/41 (53%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
 Frame = +3

Query: 249  KSGTPKTIAGXHTHTMXVLLSFGERAELAXDEY-IPLSPIM 368
            ++G PKTI G  TH+  VLL+ GERAELA ++Y +PL P++
Sbjct: 940  QAGRPKTITGFQTHSTPVLLAAGERAELATEKYVVPLIPLL 980


>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
            (MRP1) identical to glutathione S-conjugate transporting
            ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
          Length = 1622

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 252  SGTPKTIAGXHTHTMXVLLSFGERAELAXDEYIPLSPIMEGFVILKKNEDSVMASV 419
            SGTPKT      + +  LLSFG+ +    + Y     IM      KK  D+++ S+
Sbjct: 943  SGTPKTHGPLFYNIVYALLSFGQVSVTLINSY---WLIMSSLYAAKKMHDAMLGSI 995


>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
           histidine kinase AHK2 [Arabidopsis thaliana]
           gi|13537196|dbj|BAB40774
          Length = 1176

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 345 TRQXPVLLAXRRTAAPASCECGNXLLSSVYRFSDNIHSLSHTXAXVQGLKIFV 187
           TR  P  L    + +  SC CGN  L  + +  +N+   +H     QGL  ++
Sbjct: 123 TRGLPWNLGLGHSISSTSCMCGN--LEPILQQPENLEEENHEEGLEQGLSSYL 173


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/68 (25%), Positives = 25/68 (36%)
 Frame = +3

Query: 207 ERXXACGTGCGCYRKSGTPKTIAGXHTHTMXVLLSFGERAELAXDEYIPLSPIMEGFVIL 386
           +R   C     CY   G  KT+A         L++     + A DE +      E   IL
Sbjct: 109 KREILCDCNNDCYSLPGEKKTVASTDVQRKSDLITVRTNDQRAADEVMTCQNKEESVEIL 168

Query: 387 KKNEDSVM 410
           K  +  V+
Sbjct: 169 KSGDPKVV 176


>At2g32640.2 68415.m03985 expressed protein
          Length = 385

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 177 QPAGLHRSRQYVQQVVGFAEDYGL 106
           QP G   ++Q V +V GF++DY +
Sbjct: 81  QPTGPQETQQIVSRVSGFSQDYSM 104


>At2g32640.1 68415.m03984 expressed protein
          Length = 585

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 177 QPAGLHRSRQYVQQVVGFAEDYGL 106
           QP G   ++Q V +V GF++DY +
Sbjct: 81  QPTGPQETQQIVSRVSGFSQDYSM 104


>At5g53840.1 68418.m06690 F-box family protein (FBL13) contains
           F-box domain PF:00646
          Length = 444

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 327 ELAXDEYIPLSPIMEGFVILKKNEDSV 407
           E   D+ I  SP++E   I+K +ED+V
Sbjct: 177 ETTLDKIISCSPVLEELTIVKSSEDNV 203


>At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein contains Pfam domain PF03171 2OG-Fe(II)
           oxygenase superfamily
          Length = 438

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -2

Query: 291 CEC-GNXLLSSVYRFSDNIHSLSHTXAXVQGLKIF 190
           CE  G  LL    RFS   H   HT   V+GLK++
Sbjct: 137 CESRGASLLKQSKRFSAKEHVRGHTANVVKGLKLY 171


>At4g31160.1 68417.m04423 transducin family protein / WD-40 repeat
            family protein contains 2 WD-40 repeats (PF00400);
            KIAA0800 protein, Homo sapiens GI:3882321 EMBL:AB018343
          Length = 1846

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 277  PAIVFGVPLFR*HPQPVPHAXXRSRAEDFRRG*PASGVASXSPIRTASSGI 125
            P++    PL + H QPVP       + D   G  ++G A  +P+  ASSG+
Sbjct: 878  PSLSNKPPLAQNH-QPVPGQATTRPSTDVAVGTQSTGNAPQTPVAPASSGL 927


>At1g53345.1 68414.m06047 expressed protein
          Length = 325

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 60  ALAGLLVVTHRLPRLQDHNPRQIPLLAVRIGDXDATPLA 176
           +L G+  V +R+P L D N  +I L +V   + D TP++
Sbjct: 262 SLRGVGAVVYRVPELGDENKLKISLRSV--AEEDTTPVS 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,999,197
Number of Sequences: 28952
Number of extensions: 163338
Number of successful extensions: 373
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)