Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0994
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-...    52   1e-05
UniRef50_UPI0000EB41AD Cluster: chromosome transmission fidelity...    36   1.2  
UniRef50_Q4T574 Cluster: Chromosome undetermined SCAF9372, whole...    33   8.8  
UniRef50_Q0RLN5 Cluster: Putative uncharacterized protein; n=1; ...    33   8.8  

>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
           protein - Bombyx mori (Silk moth)
          Length = 272

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 34/103 (33%), Positives = 35/103 (33%)
 Frame = +1

Query: 88  IVPSQRSXXXXXXXXXXXXXXXXXXXXXXXXXVXPRNFXXXXXXXXXXXXXXXXXXMPQL 267
           IVPSQRS                         V PRNF                      
Sbjct: 170 IVPSQRSFFRRNFRGGRRGGGPGPMNRGGFRRVRPRNFQPGQGGQNQAQRQNGQDGDASA 229

Query: 268 QHQTNSRGPSXXXXXXXXXXXXXXPMRARPRHPEAVMCGTSFM 396
                 +GPS              PMRARPRHPEAVMCGTSFM
Sbjct: 230 TTSNQQQGPSLKVTNLLVLLLRQLPMRARPRHPEAVMCGTSFM 272


>UniRef50_UPI0000EB41AD Cluster: chromosome transmission fidelity
           factor 8 homolog (S. cerevisiae) (CTF8), transcript
           variant 1, mRNA; n=1; Canis lupus familiaris|Rep:
           chromosome transmission fidelity factor 8 homolog (S.
           cerevisiae) (CTF8), transcript variant 1, mRNA - Canis
           familiaris
          Length = 200

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +3

Query: 144 GRSWPNE*RXVPSXASAQFPAGAGRTKSGSAPKWPGWDASATTSNQQQGAKPKS 305
           GR WP   R  P+   A  P       +G+AP  P W  ++T ++   G  P S
Sbjct: 21  GRGWPGAGRPPPASLPAARPPPGPSAPAGAAPPAPLWWPASTPASGNMGTSPSS 74


>UniRef50_Q4T574 Cluster: Chromosome undetermined SCAF9372, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF9372,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 1579

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 135 TPWGRSWPNE*RXVPSXASAQFPAGAGRTKSGSAPKWPGWDASAT 269
           T WG   P E   +    +     G+G TK+  +PK  GWD +++
Sbjct: 234 TGWGGQSPTESSQLNGDTAGSSVWGSGETKAADSPKDSGWDTASS 278


>UniRef50_Q0RLN5 Cluster: Putative uncharacterized protein; n=1;
           Frankia alni ACN14a|Rep: Putative uncharacterized
           protein - Frankia alni (strain ACN14a)
          Length = 133

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -3

Query: 289 PCCWFDVVAEASHPGHFGAEPDFVLPAPAGNCA 191
           P CW DVVA+    GH    PD  L  PA   A
Sbjct: 8   PTCWDDVVADLRSRGHLVLAPDLPLGDPAATYA 40


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 545,950,496
Number of Sequences: 1657284
Number of extensions: 9918547
Number of successful extensions: 21792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21774
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)