Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0994
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.6  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 307  LLLGLAPCCWFDVVAEASHPGHFG-AEPDF-VLPAPAGNCAXAXD 179
            +LL L P CW+ +   A +   F  AE +F  L    G  A A +
Sbjct: 1550 VLLDLDPACWYHLRVTAHNNAGFNVAEYEFATLTVTGGTIAPARE 1594


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 253 HPGHFGAEPDFVLPAP 206
           HP H  + P  V P P
Sbjct: 239 HPPHLSSHPAIVTPGP 254


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = -3

Query: 253 HPGHFGAEPDFVLPAP 206
           HP H  + P  V P P
Sbjct: 131 HPPHLSSHPAIVTPGP 146


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 481 YRIEIFANSYLYWNVRXGVSNLELHRYHWIKDVI 582
           YR+E  A S  Y +   G +     R  W+   I
Sbjct: 852 YRVEYSAASDAYTHAPEGFNEFYNQRRRWVPSTI 885


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 481 YRIEIFANSYLYWNVRXGVSNLELHRYHWIKDVI 582
           YR+E  A S  Y +   G +     R  W+   I
Sbjct: 852 YRVEYSAASDAYTHAPEGFNEFYNQRRRWVPSTI 885


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 481 YRIEIFANSYLYWNVRXGVSNLELHRYHWIKDVI 582
           YR+E  A S  Y +   G +     R  W+   I
Sbjct: 852 YRVEYSAASDAYTHAPEGFNEFYNQRRRWVPSTI 885


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 481 YRIEIFANSYLYWNVRXGVSNLELHRYHWIKDVI 582
           YR+E  A S  Y +   G +     R  W+   I
Sbjct: 852 YRVEYSAASDAYTHAPEGFNEFYNQRRRWVPSTI 885


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 567 PMIPMQFQIRDPAPYV 520
           P+ PMQ QI +P P +
Sbjct: 408 PVPPMQSQIINPQPQI 423


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,044
Number of Sequences: 336
Number of extensions: 2736
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)