Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0994
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   1.5  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   3.4  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 204 AGAGRTKSGSAPKWPGWDASATTSNQQQGAKPKSNK 311
           AGA RTK     + PG D   + S+QQ  A+ ++N+
Sbjct: 54  AGAERTKENPFREEPGADFDRSGSDQQYSAEAEANQ 89


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 237 PKWPGWDASATTSNQQQGAKPKSNKP 314
           P W   D+S   +     A PKSNKP
Sbjct: 3   PHWKRHDSSNIPTQPSPSASPKSNKP 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,275
Number of Sequences: 5004
Number of extensions: 40579
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)