Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0994
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0069 + 22506885-22508354                                         29   4.6  
03_05_0920 - 28812796-28813325,28814019-28816377                       28   6.1  
07_03_0382 + 17470508-17470807,17471449-17474517                       28   8.1  

>04_04_0069 + 22506885-22508354
          Length = 489

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 177 PSXASAQFPAGAGRTKSGSAPKWPGWDASATT 272
           P+ A+ +  AG+G + +GS P W G  A A T
Sbjct: 48  PASATRRVAAGSGVSAAGSEPWWCGSTADAAT 79


>03_05_0920 - 28812796-28813325,28814019-28816377
          Length = 962

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -3

Query: 253 HPGHFGAEPDFV-LPAPAGNCAXAXDGTXLYSLGQDLPHGVH 131
           HP H G++PD V +    GN       +  YS     P  +H
Sbjct: 545 HPRHSGSDPDMVKITVAGGNVNGGAAASETYSQASSGPRDIH 586


>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = -2

Query: 428 ECXTTRINMHYINDVPHITASGCLGLALIGSCLNSSTNRFVTFRLGPLLLV*C 270
           E   T++N  YI+ V  ++   C  L    +CL+ + +      +G +++  C
Sbjct: 306 ENVATKLNASYIHQVKELSFQNCWSLLCCNACLDENLHGNTLRNIGIMIIQKC 358


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,780,015
Number of Sequences: 37544
Number of extensions: 277252
Number of successful extensions: 588
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)