Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0994
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    29   2.4  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    29   2.4  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    29   2.4  
Z81500-1|CAB04093.1|  390|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical ...    28   7.3  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 186  ASAQFPAGAGRTKSGSAPKWPGWDASATTSNQQQGAKPKSNKP 314
            +S   P G   T S +AP+ P   AS+T    ++   P ++KP
Sbjct: 1284 SSTSAPDGVSPTSSATAPEVPTTSASSTPDAVEESGIPSTSKP 1326


>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 535 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 648
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 478 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 515


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 535 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 648
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 484 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 521


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 535 VSNLELHRYHWIKDVIFLS*IIY**IYMFWLYTKL*IV 648
           ++   +HR+HWI  ++F    +   ++ F +Y  L IV
Sbjct: 484 ITQRTMHRFHWISQMLFFFGFVIFCLFYFLIYPNLHIV 521


>Z81500-1|CAB04093.1|  390|Caenorhabditis elegans Hypothetical
           protein F11D11.1 protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 448 CXTDEC*FLMLYRIE-IFANSYLYWNVRXGVSNLELHRYHW 567
           C  DE  FLM +R+E  + +SYL  N    +S +E+H+  W
Sbjct: 53  CFEDEHCFLMYFRVEKCYFHSYL--NTGQLISVVEVHKSQW 91


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 201 PAGAGRTKSGSAPKWPGWDASATTSNQQQGAKPKS 305
           P+G GR +    P  P     A  S +++ AKPK+
Sbjct: 222 PSGRGRGRGRGRPPGPNATPKAAASEKKRAAKPKA 256


>AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical
           protein Y32G9A.5 protein.
          Length = 275

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 195 QFPAGAGRTKSGSAPKWPG-WDASATTSNQQQ 287
           Q+P  +   +  SAP++PG ++A A+TS++ Q
Sbjct: 103 QYPGSSQYPQGSSAPRYPGNYNAFASTSDEPQ 134



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 195 QFPAGAGRTKSGSAPKWPG-WDASATTSNQQQ 287
           Q+P  +   +  SAP++PG ++A A+TS++ Q
Sbjct: 196 QYPGSSQYPQGSSAPRYPGNYNAFASTSDEPQ 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,200
Number of Sequences: 27780
Number of extensions: 237859
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)