Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0994
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.4  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 545 WNCIGIIGSKM*YFYHK*YIDEFICFGCILN 637
           WN +G+ G+ + YF    Y    I  G +LN
Sbjct: 442 WNVLGVQGALLSYFIEPIYFHS-IVLGSLLN 471


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 304 LLGLAPCCWFDV 269
           ++G  PCCW+ +
Sbjct: 482 MIGYYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -3

Query: 304 LLGLAPCCWFDV 269
           ++G  PCCW+ +
Sbjct: 535 MIGYYPCCWWKI 546


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 154 QDLPHGVHRENXDGKN 107
           Q++  GV REN  GKN
Sbjct: 16  QNIRGGVVRENSSGKN 31


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 681 TL*NRD**KFKYNS*FSIQPKHINSSIYY 595
           T+ N +  K+ YN+ ++    + N  +YY
Sbjct: 89  TIHNNNNYKYNYNNKYNYNNNNYNKKLYY 117


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 587 KNITSLIQ*YLCSSRLETPXLTFQ 516
           + ++S+   Y C  R E P ++FQ
Sbjct: 644 EEVSSIETNYECGLRFEDPMISFQ 667


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,209
Number of Sequences: 438
Number of extensions: 3382
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)