Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0993
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 7.5
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 25 9.9
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 25 9.9
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 25 9.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 9.9
SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein fa... 25 9.9
SPBC1348.01 |||S. pombe specific DUF999 protein family 5|Schizos... 25 9.9
SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|... 25 9.9
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 25 9.9
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 25 9.9
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +2
Query: 254 QPKLPAFI---IIKDNNH*GKNIKRPEIALMCVALWLGHLWCIT 376
+P L AF II D H KN K + AL C AL + WC+T
Sbjct: 370 KPSLFAFYWWRIILDEAHTIKN-KSSKSALACCALQGINRWCLT 412
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 331 SNF-WPLNIFSSMIIVFNNDER 269
SNF WPL I S+IIVF D++
Sbjct: 103 SNFRWPLLIIWSIIIVFAVDKK 124
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 484 SYHYI*KELEKDSHFVKKNIVAMSW 410
+Y YI ++ KDS K+NI + W
Sbjct: 383 AYQYIAEQFLKDSRKKKRNIDVLQW 407
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 331 SNF-WPLNIFSSMIIVFNNDER 269
SNF WPL I S+IIVF D++
Sbjct: 103 SNFRWPLLIIWSIIIVFAVDKK 124
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 124 PQRYYIFILFYMLLVKA-SNYL-HYTYFLMTL*AHC 225
P Y+ L YMLL + + +L HY YF +TL A C
Sbjct: 1326 PSLYFGSRLMYMLLFGSITAWLPHYIYFWITLTALC 1361
>SPBCPT2R1.01c ||SPBPB2B2.20c|S. pombe specific DUF999 protein
family 9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 331 SNF-WPLNIFSSMIIVFNNDER 269
SNF WPL I S+IIVF D++
Sbjct: 103 SNFRWPLLIIWSIIIVFAVDKK 124
>SPBC1348.01 |||S. pombe specific DUF999 protein family
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 331 SNF-WPLNIFSSMIIVFNNDER 269
SNF WPL I S+IIVF D++
Sbjct: 103 SNFRWPLLIIWSIIIVFAVDKK 124
>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
Med31|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 553 FYYTMLFLHRGSQS*AFLEYVFHYKNWYSPE 645
+Y L H+ + AFL+Y+ + + W PE
Sbjct: 31 WYLNFLAQHKYFEDEAFLQYLEYMEYWREPE 61
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 331 SNF-WPLNIFSSMIIVFNNDER 269
SNF WPL I S+IIVF D++
Sbjct: 103 SNFRWPLLIIWSIIIVFAVDKK 124
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 514 LYFYLIT*FCGFDFYYTMLFLH 579
LYFY++T + G+ F M+ LH
Sbjct: 207 LYFYMVTAWGGYVFITNMIPLH 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,002
Number of Sequences: 5004
Number of extensions: 48607
Number of successful extensions: 115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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