Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0993
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin...    29   2.1  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    29   3.7  
At2g47980.1 68415.m06004 expressed protein                             28   6.5  
At1g04210.1 68414.m00411 leucine-rich repeat family protein / pr...    27   8.6  

>At3g19960.1 68416.m02526 myosin (ATM) nearly identical to myosin
           [Arabidopsis thaliana] GI:6491702; similar to myosin
           GI:6491702 from [Arabidopsis thaliana] ;contains Pfam
           profiles: PF00063: myosin head (motor domain), PF00612:
           IQ calmodulin-binding motif; identical to cDNA myosin
           (ATM) GI:297068
          Length = 1166

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +2

Query: 188 ITLTSL*HYKHTARWNCLTIQIQPKLPAFIIIK---DNNH*GKNIKRPEIALMCVALWLG 358
           + LTS   YK+  + NC +I        F  +K   D  H  K  +    A++   LWLG
Sbjct: 367 LNLTSAHEYKYLGQSNCYSINGVDDAERFHTVKEALDIVHVSKEDQESVFAMLAAVLWLG 426

Query: 359 HL 364
           ++
Sbjct: 427 NV 428


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
            Pfam PF04054: CCR4-Not complex component, Not1; contains
            TIGRFAM TIGR01612: reticulocyte binding protein; similar
            to General negative regulator of transcription subunit 1
            (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
            gb|T44328 and gb|AA395265
          Length = 2378

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/50 (36%), Positives = 28/50 (56%)
 Frame = +1

Query: 28   DVMAYITKYLNKLSNTNFISSKL*SIQEF*FVPQRYYIFILFYMLLVKAS 177
            DV   ++  +N +S TN I SK     E   +PQ+YY +   YM++ +AS
Sbjct: 948  DVQDKVSFIINNISTTN-IESKGKEFAEI--LPQQYYPWFAQYMVMKRAS 994


>At2g47980.1 68415.m06004 expressed protein
          Length = 1098

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 592 IDFHGEGITSCNKNQTRKIK*LSKSIINRVLSPLKESYHYI*KEL 458
           +  HG G+T   KN    ++     I N  L  LK +YH    EL
Sbjct: 858 LGMHGPGVTGIIKNLITFLRKKEDDISNIYLESLKRAYHRYSSEL 902


>At1g04210.1 68414.m00411 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 427 YFS*QNDYPFLVLSKYNGTIPLVEKEL 507
           +F    D PF+ LSKY   +PL  +E+
Sbjct: 523 FFDAGRDRPFMTLSKYEKVLPLDSREV 549


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,203
Number of Sequences: 28952
Number of extensions: 233051
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)