Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0992
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    40   0.076
UniRef50_Q1DHC9 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_Q8SV02 Cluster: Putative uncharacterized protein ECU07_...    33   5.0  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 39.5 bits (88), Expect = 0.076
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 43  AGWWYLPARTHKSSYHQ 93
           A WWYLPARTHK SYH+
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_Q1DHC9 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 403

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 501 RGPRSCSRLKHYYCEL*VKFSWSVCGKGAEIRTP 400
           RGP   S+ + +YC++     W VC KGA ++ P
Sbjct: 332 RGPDFVSKKEGFYCDMCTHTLWPVCHKGAAVQRP 365


>UniRef50_Q8SV02 Cluster: Putative uncharacterized protein
           ECU07_0900; n=1; Encephalitozoon cuniculi|Rep: Putative
           uncharacterized protein ECU07_0900 - Encephalitozoon
           cuniculi
          Length = 372

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +2

Query: 5   TSRNALLLHGRTRQGGGTYPRGLTRAPTTSKKRFFSF 115
           T RNALL+HG    G  TY RGL    +    R F F
Sbjct: 112 TKRNALLVHGFNGSGNSTYMRGLAGHLSREGYRVFCF 148


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,087,242
Number of Sequences: 1657284
Number of extensions: 9645352
Number of successful extensions: 19204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19202
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)