Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0992
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 577  SKP*RPFYPPSTIFGRARKRSCNGLTWTP 491
            ++P RP  PP  +  RA   S   +TW+P
Sbjct: 1001 TEPQRPAGPPINLEARALSSSEILITWSP 1029


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 577  SKP*RPFYPPSTIFGRARKRSCNGLTWTP 491
            ++P RP  PP  +  RA   S   +TW+P
Sbjct: 997  TEPQRPAGPPINLEARALSSSEILITWSP 1025


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 5   TSRNALLLHGRTRQGGGTYPRGLTRA 82
           T  NA+LL GR+++     P G T A
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPTPA 391


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 186 WSHLNTKKRIVFFK*NAKFKLLCYPTMYN 272
           +S+L  K ++++   +     LCYP++ N
Sbjct: 291 YSYLRLKGQMLYIPESDLVTFLCYPSVMN 319


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +3

Query: 186 WSHLNTKKRIVFFK*NAKFKLLCYPTMYN 272
           +S+L  K ++++   +     LCYP++ N
Sbjct: 291 YSYLRLKGQMLYIPESDLVTFLCYPSVMN 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,522
Number of Sequences: 438
Number of extensions: 3027
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)