Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0991
         (674 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DBF390 Cluster: splicing factor, arginine/serine...    34   3.6  

>UniRef50_UPI0000DBF390 Cluster: splicing factor,
           arginine/serine-rich 12; n=3; Rattus norvegicus|Rep:
           splicing factor, arginine/serine-rich 12 - Rattus
           norvegicus
          Length = 485

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = -2

Query: 334 RRYATEVSKKRERAIETD*DRVRQGERA*SN*PWSE---SREQASEKE-ERKSETECSVP 167
           RR  +   ++RERA E++ +R R+ ERA  +   SE    RE+A E+E ER+ E E S  
Sbjct: 356 RRSRSSFRRERERARESERERERERERARESERESERERERERARERERERERERERSTS 415

Query: 166 T 164
           T
Sbjct: 416 T 416


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 473,213,628
Number of Sequences: 1657284
Number of extensions: 7298433
Number of successful extensions: 16681
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 16057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16638
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)