Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0991
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0658 + 4923205-4923334,4923448-4923526,4923629-4923723,492...    28   7.8  

>07_01_0658 +
           4923205-4923334,4923448-4923526,4923629-4923723,
           4923802-4923851,4924216-4924340,4924703-4924769,
           4924871-4924960,4925281-4925392,4925597-4925667
          Length = 272

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 54  SQIKIHYKRFHTHASIKTSHRWRCIKNKILYTYVL 158
           + + +  K F +HA     + WRC++    Y +VL
Sbjct: 56  AMVSVILKSFPSHAVFGEENGWRCVEKSADYVWVL 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,353
Number of Sequences: 37544
Number of extensions: 183887
Number of successful extensions: 379
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)