Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0991
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              24   1.2  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.1  

>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 481 NCKI*KYSRLLRCTIDNTLLYKIY 552
           +CK  K S+LL+C IDN L+ KI+
Sbjct: 111 SCK--KSSKLLQCFIDNNLM-KIF 131


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 64  KFTTRGFIHTLVLKHLTDGAVLKI 135
           ++TT GF+ T     LTD    K+
Sbjct: 196 RYTTEGFLTTCSFDFLTDDEDTKV 219


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 45  SRISQIKIHYKRFHTHASI 101
           S+ SQ  +HY    TH+ +
Sbjct: 363 SKCSQTSVHYSNGQTHSQL 381


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 64  KFTTRGFIHTLVLKHLTDGAVLKI 135
           ++TT GF+ T     LTD    K+
Sbjct: 196 RYTTEGFLTTCSFDFLTDDEDTKV 219


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,361
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)