Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0991
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24090.1 68415.m02877 ribosomal protein L35 family protein co...    29   2.8  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    28   5.0  

>At2g24090.1 68415.m02877 ribosomal protein L35 family protein
           contains Pfam profile PF01632: ribosomal protein L35
          Length = 145

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 261 PCLTLSQSVSIALSLFFDTSVAYLRDVTSVK-ILPSRA*RSFTSKNSQKAHTF 416
           P  + S  VS+  S+ F TS++    ++ ++ +LP +   +  S NSQK H+F
Sbjct: 16  PLRSSSPKVSLRSSVHFATSLSSSHSISGLRAVLPLKI-STVASPNSQKLHSF 67


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 346 DVTSRRYATEVSKKRERAIETD*DRVRQGERA*SN*PWSESREQASEKEERKSETE 179
           ++  RR   E ++KRE A   + +  ++ E   +     E  E    +EERK E E
Sbjct: 442 EIERRRKEEEEARKREEAKRREEEEAKRREEEETERKKREEEEARKREEERKREEE 497


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,325,728
Number of Sequences: 28952
Number of extensions: 163037
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)