Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0990
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 31 0.16
SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr ... 31 0.21
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 29 0.48
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.63
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.83
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 29 0.83
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 28 1.5
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 27 1.9
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch... 27 2.5
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 3.4
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 26 4.4
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.4
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 5.9
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 7.8
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 7.8
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 7.8
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.8
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1254
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 53 KGTFQPDSDVHISYEDQQKINKFAR--LNAKVDDYKDELKVKQNDVKNLEEAVEELSLAD 226
+G F+P+ Y+ QK + L A ++ YK +L+ + KN+ + V ++ +
Sbjct: 827 EGVFEPEIGFEAEYDTSQKYQSELKNELYALLEQYKKQLRCSSLNFKNIGKEVYQVEVPS 886
Query: 227 DSEKIP 244
D K+P
Sbjct: 887 D-VKVP 891
>SPAC227.05 |||prefoldin subunit 4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 80 VHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSL--ADDSEKIPYLI 253
V + EDQ+ +N+F+ L+++ + ++K + ++++ +A E L DD + IP L
Sbjct: 4 VPVLAEDQRNLNEFSVLHSRKAIQELDIKNLKTQIEDIVDAKNECELLDEDDGDDIPALK 63
Query: 254 VKFLFVRI 277
V F ++
Sbjct: 64 VGDAFFQV 71
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 241 PLPYCEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEE 360
P PY ++F +N+E + N+E+ +AK + + L+ K EE
Sbjct: 16 PPPYYKLFTRENIEKVISNMEK-EAKHEDDANTLQPKTEE 54
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 71 DSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEE 211
+ +V YE +Q N+ L+ ++D +D L K++++ L+ +EE
Sbjct: 278 NKEVDYEYEIRQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEE 324
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.83
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 292 KNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 396
KN +A+ IH LEE EE K ++++L + L
Sbjct: 1351 KNFLRKEAEMTENIHSLEEGKEETKKEIAELSSRL 1385
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 271 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELK 366
QNL TLKN+E+A+ + I D+++ E++
Sbjct: 117 QNLSATLKNIEQARPTEEITIEDMKQAVPEIE 148
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 316 KKIHEI-HDLEEKCEELKSQMSDLKAHL 396
K I EI +D EE+ L+SQ S LKAHL
Sbjct: 402 KFIEEIRNDYEERIHALESQNSALKAHL 429
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 140 VDDYKDEL-KVKQNDVKNLEEAVEELSLADDSEK 238
+D Y D KVK KN E+ V +L++ D SEK
Sbjct: 325 LDRYGDGTSKVKDKKAKNNEKEVPDLAILDKSEK 358
>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 2.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 678 NNNIWFYNLRTISWNLISLYCN 613
N+ I++ L+ +WN+ +LYCN
Sbjct: 5 NDYIFYEYLKKTNWNIHNLYCN 26
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 235 KNPLPYCEIFICQNLEITLKNLEEAKAKKIHEIHDLEEK 351
K P+ + I ++E + L+E KA+ IH D +EK
Sbjct: 909 KRPIKVITLCIENSIESKIIELQEKKAQMIHATIDQDEK 947
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 140 VDDYKDELKVKQNDVKNLEEAVEELSLA 223
++D ++ V QND K + A ELSL+
Sbjct: 343 INDLDHQISVMQNDEKRINNAKTELSLS 370
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -1
Query: 672 NIWFYNLRTISWNLISLY 619
++ +YNL T+SWNL Y
Sbjct: 432 DVTYYNLNTLSWNLYIEY 449
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 125 RLNAKVDDYKDELKVKQNDVKNLEEAVEELS 217
R AK+ Y+ + + QN + LEE +E L+
Sbjct: 1673 RSKAKISVYEKKTRDLQNKITQLEETIENLN 1703
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 271 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 396
+ +E K +E+A K EKCE LK AHL
Sbjct: 1394 EEVENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHL 1435
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Frame = +2
Query: 65 QPDSDVHISYEDQQKINKFARLNAKVDDYKDELKV-----KQNDVKNLEEAVEELSLADD 229
+PDS+ + ++ ++ + RL +VD++ E+K K N + EEA ++ D+
Sbjct: 1166 KPDSEARLQAIERSELLQKKRLLQRVDEFSKEVKTFVENEKLNKIGGAEEADRIRTIQDE 1225
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +2
Query: 134 AKVDDYKDELKVKQNDVKNLEEAVEEL 214
AK+ +++ ++K+K DV ++EA EE+
Sbjct: 282 AKMFNHETDIKIKFADVAGVDEAKEEI 308
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 92 YEDQ-QKIN-KFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEK 238
+EDQ +K+N + + N+ + KDEL+ LEE + L A E+
Sbjct: 128 FEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQ 178
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +2
Query: 131 NAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSE---KIPYLIVK 259
N ++ D +DEL+ K+ + L A ++ +AD ++ K P+ I+K
Sbjct: 540 NFEIADLRDELQDKEQIIYALRYAQKQRDIADFNQSLAKFPHKILK 585
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 494 KLHRLTSNNYCYSKLCCFYTIRIYVS*FE 580
+LH L + ++C S L F++ YV FE
Sbjct: 1062 RLHSLFNEHFCKSNLQLFFSTDTYVIFFE 1090
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,561
Number of Sequences: 5004
Number of extensions: 39460
Number of successful extensions: 154
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -