Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0990
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693 50 2e-06
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 34 0.12
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 33 0.16
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 29 3.5
11_06_0762 + 27043460-27044319,27052096-27052912,27052992-270536... 28 6.0
10_08_1016 - 22262760-22264331 28 6.0
05_06_0116 - 25719030-25719458,25720138-25720301,25720390-257206... 28 6.0
04_01_0290 + 3843610-3843712,3844088-3846003 28 6.0
11_05_0072 - 18832152-18832341,18832470-18832582 28 8.0
02_05_1346 - 35831261-35831371,35831609-35831779,35831850-358318... 28 8.0
>03_05_0399 - 23799830-23800090,23803448-23803558,23803685-23803693
Length = 126
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/52 (38%), Positives = 37/52 (71%)
Frame = +2
Query: 74 SDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADD 229
++ +++EDQQ IN+F RLN ++ + DE+K+ + +NL++A EL L+D+
Sbjct: 7 TEAQVTWEDQQNINRFGRLNNRLHELHDEIKLAKEANENLDDAGNELILSDE 58
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/45 (42%), Positives = 30/45 (66%)
Frame = +1
Query: 274 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGKF 408
++E L+ ++E AKK+ LE++ E + SQM++LK LYGKF
Sbjct: 76 DVETRLEQMKEDAAKKLER---LEQEKESIVSQMAELKKILYGKF 117
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 271 QNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 396
Q LE LKNLE +K ++ LE+ EEL+ ++S L+ L
Sbjct: 841 QQLEANLKNLESELEQKQSQVSALEQANEELREKISSLERQL 882
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 274 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 405
NL+ ++NLE AK +E+ +EKC L SQ+ KA L K
Sbjct: 548 NLQEAVENLEAAKTNMYNEVTVHQEKCTFLSSQLE--KAQLAEK 589
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +1
Query: 274 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDL 384
NL I LKN +EA + + + +LEE EE K+++S +
Sbjct: 412 NLSIQLKNTQEANIELVSILQELEETIEEQKAEISKI 448
Score = 28.7 bits (61), Expect = 4.6
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Frame = +1
Query: 256 EIFICQNLEITLKN-LEEAKAK--KIHEIH-DLEEKCEELKSQMSDL 384
+I Q+ + LK+ L+EAK + K+ E+H + E+CEELK+Q + L
Sbjct: 1117 KIMSLQDEVLKLKSSLDEAKFERGKLEELHRSVTEECEELKAQKAML 1163
>08_02_1453 -
27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 295 NLEEAKAKKIHEIHDLEEKCEELKSQMSDLK 387
N E +A+ + +IHDL+E E +SQM L+
Sbjct: 173 NSEAERAQHLKQIHDLQEHLREKESQMLALE 203
>11_06_0762 +
27043460-27044319,27052096-27052912,27052992-27053649,
27053698-27053934,27054091-27054161,27054346-27054441
Length = 912
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 280 EITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAH 393
E+ K LEE + K I E+H+ ++L++Q+ + H
Sbjct: 873 EMEAKQLEERRDKFIQELHEENLLLDDLQAQLMKISEH 910
>10_08_1016 - 22262760-22264331
Length = 523
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Frame = +2
Query: 50 AKGTFQPDSDVHISYEDQQKINKFARLNA---KVDDYKDEL-KVKQNDVKN--LEEAVEE 211
AKG + +D + + + N R K +DY+ E+ +DV +EE +E+
Sbjct: 441 AKGELEKRADEYEEFLRDLEHNSDIRFQIDLYKDEDYRSEMASTIGDDVPTVPIEELIED 500
Query: 212 LSLADDSEK 238
LSL DD E+
Sbjct: 501 LSLGDDEEE 509
>05_06_0116 -
25719030-25719458,25720138-25720301,25720390-25720643,
25720727-25720782,25721032-25721169,25721315-25721421,
25721502-25721681,25721757-25721852,25721926-25722007,
25722084-25722425,25722666-25722695,25722788-25722880,
25722963-25723040,25723122-25723222,25723833-25724058,
25724647-25724760,25724855-25725009,25725515-25725554
Length = 894
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 271 QNLEITLKNLEEAKAKKIHEIHDL----EEKCEELKSQMSDLKAHLYGK 405
Q +E+T K +EE KI E+ L +K EE+++ S LK+ L+ K
Sbjct: 329 QKIELTAKQMEEHLTTKIKEVESLLVQSNKKIEEVEA-ASLLKSQLWNK 376
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 280 EITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKA 390
E+ K ++ KAK + E DL+ + EE++ M +K+
Sbjct: 138 EVAAKAFDDEKAKMMMESVDLKSRLEEIQGNMDMIKS 174
>11_05_0072 - 18832152-18832341,18832470-18832582
Length = 100
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 65 QPDSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEE 199
Q S I +E+ Q + + + A+ DY+DE + +D ++ EE
Sbjct: 47 QKHSGAPIPFEESQILEYYKKFLAQYSDYEDEDSEEDSDEEDSEE 91
>02_05_1346 -
35831261-35831371,35831609-35831779,35831850-35831888,
35831987-35832049,35832616-35832679,35832709-35832778,
35832866-35832934,35833101-35833186,35833670-35833800,
35834021-35834083,35834166-35834211,35834542-35834618,
35834690-35834724,35835480-35835542,35835632-35835719,
35836027-35836077,35836201-35836269
Length = 431
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 71 DSDVHISYEDQQKINKFARLNAKVDDYKD 157
D+DV I Y DQ+ + AR +++KD
Sbjct: 368 DADVRIQYNDQEDFERIARQFGIFEEWKD 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,532,068
Number of Sequences: 37544
Number of extensions: 192522
Number of successful extensions: 625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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