Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0990
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07) 40 0.001
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3) 33 0.16
SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1) 32 0.50
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 31 0.87
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08) 30 1.5
SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_36315| Best HMM Match : Hom_end (HMM E-Value=4.1) 30 2.0
SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 30 2.0
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 29 4.7
SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06) 28 6.2
SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027) 28 6.2
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14) 28 8.1
SB_31526| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05) 28 8.1
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 8.1
SB_25538| Best HMM Match : Kinesin (HMM E-Value=0) 28 8.1
>SB_36678| Best HMM Match : Aa_trans (HMM E-Value=1.8e-07)
Length = 956
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 247 PYCEIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGKFGSH 417
P E+F+ +E T + + +AK + EI E +C E+K + LK LY KFG +
Sbjct: 132 PAGEVFVNLTVEETQEFISKAKEQIEAEIKSNEAQCNEIKELLDSLKVKLYAKFGKN 188
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 179 DVKNLEEAVEELSLADD-SEKIPYLIV 256
D++NLE+A ++L + DD SE IPY V
Sbjct: 48 DLQNLEDASDDLLMVDDESELIPYPFV 74
>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
Length = 1168
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +2
Query: 116 KFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEK 238
K + ++ + + L+V + DV NL+ A++ELSL DS++
Sbjct: 86 KSEKAQQELHEKSERLRVTEEDVSNLQRAIQELSLHKDSKE 126
>SB_26027| Best HMM Match : DUF164 (HMM E-Value=0.1)
Length = 715
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/42 (30%), Positives = 28/42 (66%)
Frame = +2
Query: 89 SYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEEL 214
++ ++ +NK L A+++ K ELKVK N +++L++ +E +
Sbjct: 114 NHNNENLMNKNLLLKAELNKLKYELKVKDNKIESLQDELERM 155
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = +1
Query: 283 ITLKNLEEAKAKKIH--EIH--DLEEKCEELKSQMSDLKAHLYG 402
+ L+ L++AKA I E+H + +EK E+K +S+ K HL+G
Sbjct: 679 LNLEELQDAKAAAIRKDELHLKEAQEKYNEVKILLSESKKHLHG 722
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 274 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 405
NLE +KNLE+ KA E +LE K +K+++ L+ L K
Sbjct: 305 NLETKVKNLEKEKAFYQKESEELEAKNRRMKNEILQLQNQLKDK 348
>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
Length = 1183
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 271 QNLEITLKNLEEAKAKKIHE-IHDLEEKCEELKSQMSDL 384
QNLE+ LKN E+ ++++ + D EE+ +K + DL
Sbjct: 198 QNLELELKNAEKKGSRQLENMLKDHEEEVRRMKEERKDL 236
>SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +1
Query: 277 LEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGK 405
++I K E K IH+LEE EE +S++S+L+A G+
Sbjct: 29 IKIMKKTQESQLQMKAELIHNLEEMIEEQESKISELEARNKGE 71
>SB_4894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 292 KNLEEAKAKKIHEIHDLEEKCEELKSQM 375
+ LE K H++HD E C ELK Q+
Sbjct: 405 EELERKNTKLCHDLHDQREACAELKVQI 432
>SB_36315| Best HMM Match : Hom_end (HMM E-Value=4.1)
Length = 242
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 32 VNMSTTAKGTFQPDSDVHISYEDQ---QKINKFARLNAKVDDYKDELKVKQNDVKNL 193
VN+ G + D + ++YEDQ +++ KF+ NA V+ D + + ++KN+
Sbjct: 148 VNLLADLSGLHKSDVNTSVTYEDQRGLKRVVKFSGENASVNIDFDAVDTRSIELKNM 204
>SB_24813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1218
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 256 EIFICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGKF 408
E F LE N E K K +IH LEE+ EEL+ + + K+ + +F
Sbjct: 3 ETFFHSQLEEAKANFNEEKDKLREKIHVLEEEKEELELKFLNEKSAMEQQF 53
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +1
Query: 289 LKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHL 396
+++LEE +A+K E +L +CEE K Q+S L+ L
Sbjct: 928 VQSLEETRAEKEFERRELLLQCEEHKMQISTLQKDL 963
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 256 EIFICQN-LEITLKNLEEAKAKKIHEIHDLEEKCEELKSQM 375
E+ C+N LEI + EE K+ EI L+++CE+L +++
Sbjct: 1792 ELANCKNELEIAKQQHEEVIKGKMREISQLKKECEDLNAKI 1832
>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1450
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 95 EDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADD 229
ED++K + VDD + + + K EE V +SLADD
Sbjct: 442 EDEEKNEDVELVEEDVDDTAHNITADEGEEKEEEERVISVSLADD 486
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 ICQNLEITLKN-LEEAKAKKIHEIHDLEEKCEELKSQMSDLKAH 393
+ LE + N L K E+ +L+E+ EELK+Q ++K H
Sbjct: 1792 VLSKLEEEMNNRLAREKKPLEEEVRELQEENEELKNQRWEMKVH 1835
>SB_47240| Best HMM Match : Pkinase_C (HMM E-Value=2.8e-06)
Length = 619
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 71 DSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKI 241
+S++H Y D K + + K+ D +D+L Q K LE+ E A+D ++
Sbjct: 364 ESNLHEKYRD--KAAELRKAQNKIMDLEDQLFKLQRSQKKLEKDASERRAAEDKLQV 418
>SB_24812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1384
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Frame = +2
Query: 77 DVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVE-----ELSLADDSEKI 241
++H Y+ + K ++ ARL +D K+EL+ + +LE A E E +L D+++KI
Sbjct: 767 NLHKIYKTEAK-DEIARLQKATNDLKEELEAQGKAKYDLEAAKEKTKKLESNLKDNNDKI 825
Query: 242 PYL 250
L
Sbjct: 826 KEL 828
>SB_4371| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0027)
Length = 674
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +2
Query: 137 KVDDYKDELKVKQNDVKNLEEAV-EELSLADDSEKI 241
+VD+ + ELK K+ + LEEA+ E +++A + E++
Sbjct: 493 RVDEIRKELKTKEERIAVLEEALTESVTIAAEREEL 528
>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
Length = 1030
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 83 HISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEE 211
HI Q+KI++F NAKV+ K EL + + E ++E
Sbjct: 129 HIKEWMQKKISEFEAQNAKVNQDKAELLERNEKLSKENELLQE 171
>SB_31526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1248
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +2
Query: 104 QKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIPYLI 253
Q+I +F L AK+ YK + ++ K ++ AV + + +I YL+
Sbjct: 1195 QQITEFVGLRAKLYSYKMDEGKEEKKCKGVKRAVSRRASVSMTTRIAYLV 1244
>SB_30863| Best HMM Match : Lectin_C (HMM E-Value=2.6e-05)
Length = 421
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/42 (23%), Positives = 29/42 (69%)
Frame = +1
Query: 265 ICQNLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKA 390
+ +++++ +KN+EE+ ++ +I DL +K + +K++ + +A
Sbjct: 3 LLESIDVRIKNMEESNSEIKGQIEDLGKKRKHMKNKWNTSQA 44
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 128 LNAKVDDYKDELKVKQNDVKNLEEAVEE 211
L AK+ Y+DEL+ ++ + NL+ +E+
Sbjct: 2012 LKAKILGYRDELEREEQAISNLQNTIED 2039
>SB_25538| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 711
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = +2
Query: 44 TTAKGTFQPDSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEEL 214
T K Q ++ ++Y+ QK+ + N + D DE+ KQ ++ +A+EE+
Sbjct: 396 TEVKEVLQALEELAVNYD--QKLQEVDAKNKENDKLNDEITTKQVELSKTTKALEEV 450
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,505,904
Number of Sequences: 59808
Number of extensions: 258940
Number of successful extensions: 885
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -