Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0990
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 623 FTVILNCIEVGQPNFRIKKHKFLLC 549
           F+ +LNC     P   +K  ++L C
Sbjct: 29  FSYLLNCKNYDHPTTLLKLKRYLFC 53


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 274 NLEITLKNLEEAKAKKIHEIHDLEEKC 354
           N+++TL+N E    KKI +I+ L   C
Sbjct: 95  NIDVTLQNDEVLDWKKIFDINLLGLTC 121


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 295 NLEEAKAKKIHEIHDLEEKC 354
           NLE  + ++  E  DLEE C
Sbjct: 252 NLEREELEQFAENEDLEELC 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,736
Number of Sequences: 438
Number of extensions: 2507
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)