Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0990
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08780.1 68414.m00977 prefoldin, putative similar to Swiss-Pr...    54   1e-07
At1g22060.1 68414.m02759 expressed protein                             33   0.18 
At1g31380.1 68414.m03841 hypothetical protein                          31   0.72 
At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibit...    30   1.3  
At3g58270.1 68416.m06496 meprin and TRAF homology domain-contain...    30   1.3  
At1g32050.1 68414.m03943 secretory carrier membrane protein (SCA...    30   1.3  
At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR) domai...    29   2.2  
At3g47460.1 68416.m05161 SMC2-like condensin, putative similar t...    29   2.9  
At5g53220.1 68418.m06616 expressed protein  ; expression support...    28   5.0  
At4g11200.1 68417.m01813 hypothetical protein contains weak hit ...    28   6.7  
At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37) iden...    28   6.7  
At1g43880.1 68414.m05055 hypothetical protein low similarity to ...    28   6.7  
At4g07530.1 68417.m01179 hypothetical protein                          27   8.8  
At2g18876.1 68415.m02201 expressed protein                             27   8.8  

>At1g08780.1 68414.m00977 prefoldin, putative similar to
           Swiss-Prot:Q9NQP4 prefoldin subunit 4 (Protein C-1)
           [Homo sapiens]
          Length = 129

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 24/52 (46%), Positives = 37/52 (71%)
 Frame = +2

Query: 74  SDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADD 229
           S++ +++EDQQ IN F+RLN +V D  D++K  +   +NLE+A  EL LAD+
Sbjct: 10  SEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADE 61



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 298 LEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYGKF 408
           +EE K      +  LE++ E + +QM+ LK  LY KF
Sbjct: 84  IEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKF 120


>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +2

Query: 104  QKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKI 241
            Q +N   +L A +D  K ELK+++N   NL+  VEEL+   D + +
Sbjct: 1257 QHMNANIKLLADLDSLKSELKIERNLRNNLDRRVEELTSELDEKHL 1302


>At1g31380.1 68414.m03841 hypothetical protein
          Length = 175

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
 Frame = +1

Query: 277 LEITLKNLEEAKAKKIHE-IHDLEEKCEELKSQMSDLKAHL 396
           LE  LK++ E + ++I E + D+++KC E+K +  D++A L
Sbjct: 131 LEKDLKDVGETRIQEIEEELKDIKQKCVEMKHKCVDMEALL 171


>At4g25250.1 68417.m03633 invertase/pectin methylesterase inhibitor
           family protein similar to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 199

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 271 QNLEITLKNL-EEAKAKKIHEIHDLEEKCEELKSQMSDLK 387
           +N  + + NL ++AKA K HE+  L++  +E+K  + +LK
Sbjct: 82  KNATLVVSNLLQKAKAAKSHEVSILKDCVDEMKDTIDELK 121


>At3g58270.1 68416.m06496 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 343

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
 Frame = +1

Query: 274 NLEITLKNLEEAKAKKIHE------IHDLEEKCEELKSQMSDLKAHL 396
           NL    + LEE   KK +E      +H++EE+ +ELK + S+L+A L
Sbjct: 277 NLNWLEEKLEEVSEKKENEEAGETRVHEIEEELKELKLKCSNLEAQL 323


>At1g32050.1 68414.m03943 secretory carrier membrane protein (SCAMP)
           family protein contains Pfam domain, PF04144: SCAMP
           family
          Length = 264

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 110 INKFARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLADDSEKIP 244
           +N  ++   K+ D++ EL+ K+ D+K  EEA+ +  +  D +  P
Sbjct: 51  MNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWP 95


>At5g45000.1 68418.m05518 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 371

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +2

Query: 122 ARLNAKVDDYKDELKVKQNDVKNLEEAVEELSLA 223
           A  +AK++ + DE++V+  D++NL   +EE  +A
Sbjct: 37  AMRDAKINVFTDEIEVRGRDIQNLLSRIEESRVA 70


>At3g47460.1 68416.m05161 SMC2-like condensin, putative similar to
           SMC2-like condensin (TITAN3) [Arabidopsis thaliana]
           GI:14279543; contains Pfam profiles PF02483: SMC family
           C-terminal domain, PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1171

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 274 NLEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMS 378
           N+E TL+  E+   K +H I DL++  EE  S ++
Sbjct: 319 NMEDTLQGEEKNAEKMVHNIEDLKKSVEERASALN 353


>At5g53220.1 68418.m06616 expressed protein  ; expression supported
           by MPSS
          Length = 441

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 83  HISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVE 208
           H+  E Q++ N+F  L  K  + + E  V + + +NL+E+ E
Sbjct: 28  HLETELQKRNNEFESLELKFKELESEKLVVEEESRNLKESEE 69


>At4g11200.1 68417.m01813 hypothetical protein contains weak hit to
           Pfam profile PF03108: MuDR family transposase
          Length = 462

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +2

Query: 32  VNMSTTAKGTFQPDSDVHISYEDQQKINKFARLNAKVDDYKDELKVKQNDVKNLEEAVEE 211
           VN S   K   +  ++  +S +DQ   N  ARL+   D   +   V + DV    E ++ 
Sbjct: 245 VNASKKRKSVIEAAAEEEVS-DDQ---NSDARLSESPDSELEAEIVDEEDVNVKAEEIQV 300

Query: 212 LSLADDSEKIPY 247
             + +  E+IPY
Sbjct: 301 FDIRNYEEQIPY 312


>At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37)
           identical to FKBP12 interacting protein (FIP37)
           GI:3859944 from [Arabidopsis thaliana]
          Length = 330

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
 Frame = +1

Query: 235 KNPLPYCEIFICQNLEITLKNLEE----AKAKK---IHEIHDLEEKCEELKSQMSDLKAH 393
           K+P P   I   QNL+ + K+L+E    AK K+   I +    E++  ELKS + DLK+ 
Sbjct: 99  KSPEPRFLIDYIQNLKSSEKSLKEQLEIAKRKEASCIVQYAKREQEMAELKSAVRDLKSQ 158

Query: 394 L 396
           L
Sbjct: 159 L 159


>At1g43880.1 68414.m05055 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           fibrinogen-binding protein [Streptococcus equi]
           GI:3093478
          Length = 409

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +1

Query: 277 LEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYG 402
           +E+ +  L+  K    ++IH LE++ EEL  ++ DL +   G
Sbjct: 221 MEMEIGGLQADKQTARNQIHRLEQRREELSKKVMDLTSTAQG 262


>At4g07530.1 68417.m01179 hypothetical protein 
          Length = 818

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 277 LEITLKNLEEAKAKKIHEIHDLEEKCEELKSQMSDLKAHLYG 402
           +E+ +  L+  K     +IH LE++ EEL  ++ DL +   G
Sbjct: 595 MEMEIGGLQADKQTARKQIHRLEQRREELSKEVMDLTSTALG 636


>At2g18876.1 68415.m02201 expressed protein
          Length = 382

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
 Frame = +2

Query: 65  QPDSDVHISYEDQQK--INKFARLNAKVDDYKDELKVKQNDVKNL--EEAVEELSLADDS 232
           Q D +   S  DQ++  ++  ARL AKV+  + +L+ K+ ++ ++   EA    +L   +
Sbjct: 79  QRDVEFRESANDQRQRLLSDMARLEAKVERLETQLQAKERELGSVTRTEAKNTAALKTQN 138

Query: 233 EKI 241
           EK+
Sbjct: 139 EKL 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,082
Number of Sequences: 28952
Number of extensions: 183024
Number of successful extensions: 655
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)