Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0988
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    64   3e-09
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    44   0.004
UniRef50_UPI0001555F04 Cluster: PREDICTED: similar to E2F transc...    40   0.055
UniRef50_A7NLX3 Cluster: Oxidoreductase domain protein; n=3; Bac...    34   2.7  
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  
UniRef50_Q7R140 Cluster: GLP_12_8345_3711; n=1; Giardia lamblia ...    34   3.6  
UniRef50_Q1IKN4 Cluster: Putative uncharacterized protein precur...    33   4.8  
UniRef50_A5ZQ65 Cluster: Putative uncharacterized protein; n=1; ...    33   6.3  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 64.1 bits (149), Expect = 3e-09
 Identities = 30/39 (76%), Positives = 32/39 (82%)
 Frame = +2

Query: 5    TRFLERYDMSFFKRGLRRVLNGRQRFGSAPGIVDFHERR 121
            T F ERYDMSFFKRGL RVL+GRQR GSAPGI + H RR
Sbjct: 948  TVFPERYDMSFFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986



 Score = 35.5 bits (78), Expect = 1.2
 Identities = 19/30 (63%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -2

Query: 341  YRSRAHPYYLETLR--CMRFQRSTLLPTHR 258
            +RSR HPYYLE LR   +RFQRS L  T R
Sbjct: 911  HRSRVHPYYLEPLRSSTVRFQRSFLPRTIR 940



 Score = 33.5 bits (73), Expect = 4.8
 Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 9/38 (23%)
 Frame = -1

Query: 474 RLRSRLESCSHL---------LPFDSIQKRTVCIINDP 388
           ++R R+E CSHL         LPFDSIQ+R V I+++P
Sbjct: 825 QVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNP 862


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +3

Query: 111 MSDGDHLPSGGPYARLPTKAK-KIIYVLAFVEASRKSCRSGNIVGAHPRPPVGRQQSGSL 287
           M DG+H PSG PYA LPT+AK K+  +  FV  +     S         P    +Q+G +
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMKLTSLFIFVIVALSLLFSSTDAAPGKIPVKAIKQAGKV 60

Query: 288 ETHTXQRLQVI 320
              T +++Q+I
Sbjct: 61  IVSTLRQIQLI 71


>UniRef50_UPI0001555F04 Cluster: PREDICTED: similar to E2F
           transcription factor 1, partial; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to E2F transcription
           factor 1, partial - Ornithorhynchus anatinus
          Length = 771

 Score = 39.9 bits (89), Expect = 0.055
 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 135 SGGPYARLPTKAKKIIYVLAFVEASRKSCRSGNIVG-AHPRPPVGRQQSGS 284
           SGGP  R P++      V A +      C SG   G AHPRPP GR  SG+
Sbjct: 145 SGGPEGRSPSREGPRSAVNAGLSCGPGGCPSGRAAGEAHPRPPGGRPSSGT 195


>UniRef50_A7NLX3 Cluster: Oxidoreductase domain protein; n=3;
           Bacteria|Rep: Oxidoreductase domain protein -
           Roseiflexus castenholzii DSM 13941
          Length = 361

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 411 SSSVLSQMEEGGNSSLSET-GVFVQFLKHRFALSGLSTDSNTEHRPYIN 554
           +++V  +M +G  ++L+ T G   +  +HRF  SG+  +SNT  RPY N
Sbjct: 216 TAAVALEMADGSLATLAVTLGSSAEMTRHRFCFSGMVAESNT--RPYSN 262


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -1

Query: 141 HLMVSGHRRSWKSTMPGAEP-NRCL 70
           +L+   HR SW ST+PGA+P +RCL
Sbjct: 39  YLVDDNHRHSWTSTIPGAQPDHRCL 63


>UniRef50_Q7R140 Cluster: GLP_12_8345_3711; n=1; Giardia lamblia ATCC
            50803|Rep: GLP_12_8345_3711 - Giardia lamblia ATCC 50803
          Length = 1544

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = -2

Query: 245  SSNDVSRAT*LPRGFNKSQNIYYFFCLCRQTSIWP 141
            ++N ++ AT LPR  N + NI +FF LC ++S  P
Sbjct: 1344 NTNQINVATLLPRFINAASNICHFFFLCEESSERP 1378


>UniRef50_Q1IKN4 Cluster: Putative uncharacterized protein
           precursor; n=1; Acidobacteria bacterium Ellin345|Rep:
           Putative uncharacterized protein precursor -
           Acidobacteria bacterium (strain Ellin345)
          Length = 791

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 69  VGNGLALPLALL--TSMSDGDHLPSGGPYARLPTKAKKIIYVLAFVEASRKSCRSGN 233
           +  G+++PL  L  T  SD   + S G   R+ T A  I+Y LAF  + R    SGN
Sbjct: 312 IQQGISIPLQTLSVTGGSDVYRIASDGSPRRIWTSATDIVYTLAFDASGRLIAGSGN 368


>UniRef50_A5ZQ65 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 224

 Score = 33.1 bits (72), Expect = 6.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 604 RRFPKDYPCDLARLFLKLMYGRCSVLESVESPDRAKRCFKNWTK 473
           R+ P  YPC+L    + LM  +  ++    SP + ++C   W K
Sbjct: 107 RKIPMIYPCELLNRLVPLMTKKSDIICMTPSPLQTEQCENKWKK 150


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 753,787,053
Number of Sequences: 1657284
Number of extensions: 16497180
Number of successful extensions: 42719
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42714
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)