Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0988
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    29   0.46 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.4  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   4.3  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   4.3  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    26   5.7  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   9.9  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   9.9  

>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -2

Query: 503 SKAVLQELDKDSGLA*RAVPTFFHLTQYRRGPFALSMIPF 384
           SKA++   D  SG     +PTFFHL  +   PFAL + P+
Sbjct: 3   SKALITSPDISSGQLYIKLPTFFHLYVW---PFALFVYPY 39


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +2

Query: 350  VILIKRFQRVLGTGSLIMQTVLFCIESNGRRWEQLSKR 463
            ++ + + QR +G+ +   + +  C++ + RRW+QL KR
Sbjct: 2663 LLYLNKTQRKMGSVTEFSRIIDECMQFSLRRWQQLPKR 2700


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 447 NSSLSET-GVFVQFLKHRFALSGLSTDSNTEHRPY 548
           NS +SE    FVQFL+H   LS +   S  +  PY
Sbjct: 78  NSLMSEDQDPFVQFLRHEDLLSVMQMISKRDSTPY 112


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 417 SVLSQMEEGGNSSLSETGVFVQFLKHRFALSGLSTDSNTEHRPYI 551
           S+LS   + GN   S   +  +FL    +L+  + D  T H P +
Sbjct: 482 SILSARNDSGNEHESSRRLKTEFLIQWSSLTNAAPDKQTGHSPRV 526


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 121 VTTYHQVGHMLVCLQRQKK*YMFWLLLKPLGSHVARETSLELIPDRRW 264
           +T YH+ GH LV L  +     +   + P GS +    SL  +    W
Sbjct: 526 MTAYHEGGHALVALFTKNAMRPYKATIMPRGSSLGMTISLPDMDKDSW 573


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 147 MAHLMVSGHRRSWKSTMPG 91
           + HL+V+GH  S KSTM G
Sbjct: 177 VVHLVVTGHVDSGKSTMLG 195


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 556 KLMYGRCSVLESVESPDRAKRCFKNWTKTP 467
           +L+YG+  V++ +     AKRC + WT  P
Sbjct: 663 RLLYGKADVIKML-----AKRCNEKWTIAP 687


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,250
Number of Sequences: 5004
Number of extensions: 66457
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)