Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0988
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713     31   1.1  
02_04_0436 - 22920106-22920348,22920569-22920884,22929569-229300...    30   1.9  
04_04_1175 + 31482471-31482548,31483780-31483821,31483901-314839...    29   2.6  
03_05_1008 - 29644352-29645297,29645381-29645769                       29   4.5  
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    28   5.9  
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    28   7.8  
05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-39...    28   7.8  

>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
          Length = 246

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 452 AVPTFFHLTQYRRG--PFALSMIPFPRLFGISLLVSPHHY 339
           A P F H+ QYR G  P +   +P  +  G+   V+ H Y
Sbjct: 125 AEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNGHSY 164


>02_04_0436 -
           22920106-22920348,22920569-22920884,22929569-22930027,
           22930187-22930401,22930741-22930803,22930814-22930830,
           22931141-22931389,22931546-22931774,22932427-22932534,
           22932954-22933094,22933669-22933729,22933974-22934095,
           22934533-22934760,22934857-22935000
          Length = 864

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 395 LIMQTVLFCIESNGRRWEQLSKRDRSLCPVLEAPLCS 505
           ++M  ++FC     + W  LS R+R   P+L A LCS
Sbjct: 474 IVMSIIVFCESGEPKVWNTLSCRNRQKQPLL-ADLCS 509


>04_04_1175 +
           31482471-31482548,31483780-31483821,31483901-31483960,
           31484280-31484286,31484783-31484955,31485288-31485364,
           31485854-31485992,31486008-31486163,31486217-31486263,
           31486992-31487052
          Length = 279

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 540 DVQYWSQLRALIEQSGASRTGQRLRSRLESCSHLLP 433
           D+  WS+ RAL + +  +R+   LR+ L+  S+ LP
Sbjct: 242 DLTVWSRFRALTDSNDRARSKAYLRTSLKKLSYELP 277


>03_05_1008 - 29644352-29645297,29645381-29645769
          Length = 444

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 401 LSMIPFPRLFG-ISLLVSPHHYRSRAHPYYLETLRCMRF 288
           L ++P PR+FG  +L+VS HH RS +     + LR + F
Sbjct: 273 LWLLPAPRVFGNTTLVVSRHHNRSYSAKNMTQFLRDIGF 311


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 601 RFPKD--YPCDLARLFLKLMYGRCSVLESVESPDRAKRCFKNWTK 473
           +FP+   + CDL   FL  +  +   +E   SP++ + C +N  K
Sbjct: 225 KFPEHLYFSCDLETTFLTFLAPQIKPVEPAVSPEQLRDCLRNLKK 269


>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +2

Query: 281 ISGNAYXAASPSNMDELCSDSGGVILIKRFQRVLGTGSLIMQTVLFCIESNGRRWEQLSK 460
           I GN Y   +P++ D L + +GG    K  Q   G   LI + V     + G   E+L  
Sbjct: 67  IKGNFYNGLTPTSRDHLDAAAGGAFFSKTVQ---GAVDLIEKMV----SNMGWSEERLQT 119

Query: 461 RDRSLCPVLEAPLCSIR 511
           R R +  + E  L + +
Sbjct: 120 RQRGMHTIKETELLAAK 136


>05_01_0055 - 390371-390457,390637-390715,390804-390856,390951-391105,
            391216-391422,391518-391658,392044-392202,392296-392476,
            393153-393252,393321-393470,393581-393705,394006-394096,
            394364-394472,394558-394657,395143-395307,395401-395506,
            395590-395894,396003-396241,397036-397114,397189-397327,
            398004-398054,398316-398770,398961-399158,399199-399261,
            400212-400436,400706-400988,401109-401170
          Length = 1368

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 102  LTSMSDGD-HLPSGGPYARLPTKAKKIIYVLAFVEASRKSC 221
            +T  SDG  H+P   PY  L T   +IIY L+  EA  K C
Sbjct: 1200 VTKPSDGMFHVPQR-PYTSLGTLRDQIIYPLSREEAEMKIC 1239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,034,316
Number of Sequences: 37544
Number of extensions: 494017
Number of successful extensions: 1271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)