Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0988
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31629| Best HMM Match : DEAD (HMM E-Value=1.2e-05)                  31   0.64 
SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)                  30   2.0  
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      28   7.9  
SB_15061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_31629| Best HMM Match : DEAD (HMM E-Value=1.2e-05)
          Length = 415

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = -2

Query: 416 RGPFALSMIPFPRLFGISLLVSPHHYRSRAHPYYL-----ETLRCMRFQRSTLLPTHRRS 252
           +G   LS + FP+ F  + LV      ++ +P+ L     E LRC+   +S L+  H  +
Sbjct: 23  QGCVVLSQVAFPKGFEYTPLVQSAAKPAKEYPFILDPFQKEALRCLENNKSVLISAHTSA 82

Query: 251 G 249
           G
Sbjct: 83  G 83


>SB_38717| Best HMM Match : Cornifin (HMM E-Value=7.2)
          Length = 318

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 75  NGLALPLALLTSMSDGDHLPSGGPYARLPTK 167
           +G+  PLA  TS SD  H P GGP A  PT+
Sbjct: 33  SGIFSPLASSTSASDSRHRPVGGP-AYSPTE 62


>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 806

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +1

Query: 181 YMFWLLLKPLGSHVA---RETSLELIPDRRWVGSKVDLWK 291
           YM W L+KPL + ++   RE +L+L+     V S    WK
Sbjct: 330 YMVWHLIKPLTTELSKPYREAALDLMRVEMGVESGAPTWK 369


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 396  NDPVPKTLWNLFISITPPLSEQSSSILLGDAAXYAFPEIHF 274
            + P+  + ++ FIS TP ++  SSS+L G +   + P + +
Sbjct: 1406 SSPISLSSFSSFISHTPYITPPSSSMLSGSSQQTSIPTVQY 1446


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -2

Query: 407  FALSMIPFPRLFGISLLVSPHHYRS-RAHPYYLETLRCMRFQRSTLLPTHRR 255
            F+L   P    +   L   P HYR  R HP+Y   LR   + R    P H R
Sbjct: 1234 FSLPCSPSSSFYYRVLRHHPFHYRVLRHHPFYYRVLRHPFYYRVLRHPFHYR 1285


>SB_15061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -2

Query: 434 HLTQYRRGPFALSMIPFPRLFGIS------LLVSPHHYRSRAHPYYLETLRCMRFQRST 276
           HL+QY  G F  +M  F  L  ++      L VSP+     +H   ++ + CM  +R T
Sbjct: 480 HLSQYPPGNFLSAMSNFHLLVFLATNDMLPLKVSPNANAKNSHKTLIDCINCMDLERLT 538


>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2123

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 105 STMPGAEPNRC--LPLSTLRKPRLKKDMS*RSRNLV 4
           ST+P + P RC   P  T  +PR K ++  RSRNL+
Sbjct: 334 STVPSSSPLRCSPAPQPTYSEPR-KTNLLLRSRNLI 368


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,232,367
Number of Sequences: 59808
Number of extensions: 526254
Number of successful extensions: 1327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)