Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0988
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.50 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.6  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   4.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.1  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 142 PPDGKWSPSLMEVNNARG 89
           PPD  W P ++  NNA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 342 LSEQSSSILLGDAAXYAFPEIHFAAYPPAV 253
           L  +++  ++G     A P IHF  YP  V
Sbjct: 15  LLNETAKAIIGVDECQATPVIHFLQYPGCV 44


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
 Frame = -3

Query: 148 YGPPDGKWSPSLMEVNNARGRAK----PLPTIKYSPQASFE 38
           Y P +  W P ++  NNA G  +       T+KY+   S++
Sbjct: 109 YVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWK 149


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 291 THTXQRLQVIWMSSAPIVV 347
           +HT Q L  IW  + P+VV
Sbjct: 154 SHTTQDLVFIWNMTDPLVV 172


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 612 GPSGVFPRIIP 580
           GPS +FPR IP
Sbjct: 145 GPSTLFPRFIP 155


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -1

Query: 387 VPKTLWNLFISITPPLSEQSSSILLGDAA-XYAFP 286
           VP+   NL  S+  PLS +++ + +G A+   AFP
Sbjct: 262 VPEIEDNLETSLFRPLSSEATDLRMGVASFCKAFP 296


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 142 PPDGKWSPSLMEVNNARG 89
           P D  W P ++  NNA G
Sbjct: 106 PSDHIWRPDIVLYNNADG 123


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 142 PPDGKWSPSLMEVNNARG 89
           P D  W P ++  NNA G
Sbjct: 106 PSDHIWRPDIVLYNNADG 123


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 142 PPDGKWSPSLMEVNNARG 89
           P D  W P ++  NNA G
Sbjct: 102 PSDHIWRPDIVLYNNADG 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,141
Number of Sequences: 438
Number of extensions: 4800
Number of successful extensions: 55
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)