Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0988
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    29   2.1  
At3g25100.1 68416.m03135 cell division control protein-related c...    29   3.7  
At4g24490.1 68417.m03510 geranylgeranyl transferase alpha subuni...    28   4.9  
At2g39700.1 68415.m04870 expansin, putative (EXP4) similar to al...    28   4.9  
At5g45420.1 68418.m05581 myb family transcription factor contain...    28   6.5  
At5g28237.2 68418.m03423 tryptophan synthase, beta subunit, puta...    28   6.5  
At5g28237.1 68418.m03422 tryptophan synthase, beta subunit, puta...    28   6.5  
At1g35190.1 68414.m04365 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   6.5  
At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containi...    28   6.5  
At5g13890.3 68418.m01625 expressed protein contains Pfam profile...    27   8.6  
At5g13890.2 68418.m01624 expressed protein contains Pfam profile...    27   8.6  
At5g13890.1 68418.m01623 expressed protein contains Pfam profile...    27   8.6  
At2g39120.1 68415.m04806 expressed protein                             27   8.6  

>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 154 VCLQRQKK*YMFWLLLKPLGSHVARETSLELIPDRRWVGSKVDLWKRIXRSVSK*YG 324
           V +  +++ + FW   K +G+HV+   SL  +P R W   +   W++I   V K  G
Sbjct: 294 VVVYDEQQAHTFW---KRIGAHVSNSASLANLPKREWNHCR-QRWRKINDYVCKFVG 346


>At3g25100.1 68416.m03135 cell division control protein-related
           contains weak similarity to cell division control
           protein 45 homolog (Suppressor of nda4 protein)
           (Swiss-Prot:O74113) [Schizosaccharomyces pombe]
          Length = 596

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +2

Query: 257 AGG*AAKWISGNAYXAASPSNMDELCSDSGGVILIKRFQRVLGTGSLIMQTVLFCIESNG 436
           +GG +A    G AY A S +N+D+L S     I ++R   +L  GS  + T   CI S  
Sbjct: 423 SGGSSASKQFGEAYDALSLNNLDKLRSGMQQAIKVQR--AILRQGSAAI-TKSGCIRSGR 479

Query: 437 R-RWEQL 454
           + RW ++
Sbjct: 480 KFRWVKI 486


>At4g24490.1 68417.m03510 geranylgeranyl transferase alpha
           subunit-related / RAB geranylgeranyltransferase alpha
           subunit-related low similarity to SP|Q08602 [Rattus
           norvegicus]
          Length = 683

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 281 ISGNAYXAASPSNMDELCSDSGGVILIKRFQRVLGTGSLIMQTVLFCIESN-GRRWEQLS 457
           +SG    + S S     CS+SG   LI  F + +G  S    T+   ++ N G  WE + 
Sbjct: 254 LSGAGCLSGSSSMFTTFCSESGSFPLILYFDQAVGGVSSSTVTIDSELKGNEGLVWEPIP 313

Query: 458 KRDRSLCPVLEAPL 499
            ++  +  V  A L
Sbjct: 314 NKNSQVSCVWVARL 327


>At2g39700.1 68415.m04870 expansin, putative (EXP4) similar to
           alpha-expansin 6 precursor GI:16923359 from [Cucumis
           sativus]; alpha-expansin gene family, PMID:11641069
          Length = 257

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -2

Query: 452 AVPTFFHLTQYRRG--PFALSMIPFPRLFGISLLVSPHHY 339
           A+P F  + QYR G  P +   +P  +  GI   ++ H Y
Sbjct: 134 AMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRY 173


>At5g45420.1 68418.m05581 myb family transcription factor contains
           Pfam profile: PF00249 Myb DNA binding domain
          Length = 309

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 408 RSSSVLSQMEEGGNSSLSETGVFVQFLKHRFALSGLSTDSNTEH 539
           ++ +V+ + +E G   + E+  + QFLK+R A      D N E+
Sbjct: 195 KTENVIKKAKEIGEKKIYESDDYAQFLKNRKASDPRLVDENEEN 238


>At5g28237.2 68418.m03423 tryptophan synthase, beta subunit,
           putative similar to SP|P14671 Tryptophan synthase beta
           chain 1, chloroplast precursor (EC 4.2.1.20)
           {Arabidopsis thaliana}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 372

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 225 SGNIVGAHPRPPVGRQQSGSLETHTXQRLQVIWMSSAPIVV 347
           SG +VG HP P + R+    +   T ++ + +W     ++V
Sbjct: 257 SGTVVGPHPCPIIVREFQSVIGKETRRQAKQLWGGKPDVLV 297


>At5g28237.1 68418.m03422 tryptophan synthase, beta subunit,
           putative similar to SP|P14671 Tryptophan synthase beta
           chain 1, chloroplast precursor (EC 4.2.1.20)
           {Arabidopsis thaliana}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 465

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 225 SGNIVGAHPRPPVGRQQSGSLETHTXQRLQVIWMSSAPIVV 347
           SG +VG HP P + R+    +   T ++ + +W     ++V
Sbjct: 257 SGTVVGPHPCPIIVREFQSVIGKETRRQAKQLWGGKPDVLV 297


>At1g35190.1 68414.m04365 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein low similarity to hyoscyamine
           6-dioxygenase hydroxylase from Hyoscyamus niger
           [GB:P24397][SP|P24397], Atropa belladona [gi:4996123];
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily
          Length = 329

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 14  LERYDMSFFKRGLRRVL-NGRQRFGSAPGIVD 106
           LER+   FFK  L RVL NG++R+ S P  V+
Sbjct: 250 LERWSNGFFKSTLHRVLGNGQERY-SIPFFVE 280


>At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 537

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 507 IEQSGASRTGQRLRSRLESCSHLLPFDSIQKRTVCIINDPVPKTLWNLFISI 352
           ++Q G S  G      ++SC  L   D ++K    +  D   KT WN F ++
Sbjct: 233 MKQRGISPCGVTYSIWMQSCGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNL 284


>At5g13890.3 68418.m01625 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 443 TFFHLTQYRRGPFALSMIPFPRLFGISLLVSPHHYRSRAHPYYLETLRC-MRFQRSTLL 270
           TFFHL +  +   A    PFPRL  ++     +H R +  P ++  L   + F   TL+
Sbjct: 25  TFFHLLKSPQSYAAKPFYPFPRLSSVTGNNHHNHNRLQNLPLFILILSLFVAFLHETLI 83


>At5g13890.2 68418.m01624 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 443 TFFHLTQYRRGPFALSMIPFPRLFGISLLVSPHHYRSRAHPYYLETLRC-MRFQRSTLL 270
           TFFHL +  +   A    PFPRL  ++     +H R +  P ++  L   + F   TL+
Sbjct: 25  TFFHLLKSPQSYAAKPFYPFPRLSSVTGNNHHNHNRLQNLPLFILILSLFVAFLHETLI 83


>At5g13890.1 68418.m01623 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 310

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 443 TFFHLTQYRRGPFALSMIPFPRLFGISLLVSPHHYRSRAHPYYLETLRC-MRFQRSTLL 270
           TFFHL +  +   A    PFPRL  ++     +H R +  P ++  L   + F   TL+
Sbjct: 25  TFFHLLKSPQSYAAKPFYPFPRLSSVTGNNHHNHNRLQNLPLFILILSLFVAFLHETLI 83


>At2g39120.1 68415.m04806 expressed protein
          Length = 387

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 87  EPNRCLPLSTLRKPRLKKDMS 25
           EPNRC+P+S + K   + D+S
Sbjct: 62  EPNRCIPISAISKKTRQFDVS 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,401,186
Number of Sequences: 28952
Number of extensions: 371386
Number of successful extensions: 941
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)