Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0987
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   1.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   1.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.0  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 157 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDR 255
           RQ  PW RKV   G    ++ TF P ++  R R
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQR 237


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 157 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDR 255
           RQ  PW RKV   G    ++ TF P ++  R R
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQR 237


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 157 RQPIPWARKVKYLGVTLDASMTFRPHIKSVRDR 255
           RQ  PW RKV   G    ++ TF P ++  R R
Sbjct: 208 RQIYPWMRKVHVAGA---SNGTFAPGMEPKRQR 237


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 622 QSPSTP*TRPYGSIRS 669
           Q    P T+PYG+ RS
Sbjct: 547 QQSQNPPTKPYGTCRS 562


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,610
Number of Sequences: 336
Number of extensions: 3297
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)