Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0987
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   5.8  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    26   5.8  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   7.6  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 527 ASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDP 670
           AS+R+ + +M   NR+I +    +P  +   +    R  H+L D   P
Sbjct: 334 ASDRFKENSMWEKNRMITSGVSKAPGLESDYSLMEERRVHLLVDELRP 381


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 293 TDHGVESTENKRGRSRTDFICGRNVIDASRVTPRYLT 183
           +D G+E++E+ R +S      GRN    SR +  + T
Sbjct: 493 SDSGIEASESNRRKSDIFSFSGRNSFSVSRPSSSHST 529


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 282 PMICKRSKMSLRNKVTLYK 338
           P ICK ++++L+N +TL K
Sbjct: 63  PTICKGNEIALKNNITLEK 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,622
Number of Sequences: 5004
Number of extensions: 51691
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)