Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0987
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 34 0.11
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 31 0.76
AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical ... 30 1.7
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 29 2.3
AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical... 29 4.0
U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin prote... 27 9.3
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote... 27 9.3
U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin prote... 27 9.3
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote... 27 9.3
AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin pro... 27 9.3
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 273 RLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASXVFAHAARTHIDTLQSLQSRFCR 440
+L M K S + + + LYKT IRP + Y + V + ++ T++S+Q+ F R
Sbjct: 204 QLANMFNKYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 599 PNPDHAGASHRRRPRHVLTDPSD 667
PN DH G +H RR R+ DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 599 PNPDHAGASHRRRPRHVLTDPSD 667
PN DH G +HRR+ H DPSD
Sbjct: 198 PNVDHTGHNHRRKRNHD-DDPSD 219
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +2
Query: 599 PNPDHAGASHRRRPRHVLTDPSD 667
PN DH G +HRRR R DPSD
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSD 308
>AF043700-1|AAB97571.2| 328|Caenorhabditis elegans Hypothetical
protein K09H9.4 protein.
Length = 328
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 324 VTLYKTCIRPVMTYASXVFAHAARTHIDTLQSLQSRFCR 440
+ LYKT IRP + Y + V + ++ ++S+Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 163 PIPWARKVKYLGVTLDASMTFRPHIKSV 246
PI + + LG+ D+ +TF+PHIK +
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI 215
>AF039044-12|AAG24130.2| 405|Caenorhabditis elegans Hypothetical
protein F48G7.11 protein.
Length = 405
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 285 MICKRSKMSLRNKVTLYKTCIRPVMTYASXVFAHAARTHIDTLQSLQSRFCRL-AVGAPW 461
M+C+R SL++++ K C R M Y + + + +T D + S SR L +VG+P
Sbjct: 48 MVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSRSSNLSSVGSPQ 105
Query: 462 FVRN 473
+ N
Sbjct: 106 SLAN 109
>U00032-4|AAL32216.1| 953|Caenorhabditis elegans Rabphilin protein
1, isoform a protein.
Length = 953
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 533 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 664
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 368 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 411
>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
1, isoform b protein.
Length = 1028
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 533 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 664
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 443 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 486
>U00032-2|AAL32218.1| 962|Caenorhabditis elegans Rabphilin protein
1, isoform c protein.
Length = 962
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 533 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 664
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 377 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 420
>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
1, isoform d protein.
Length = 1106
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 533 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 664
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 521 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 564
>AF399852-1|AAK84870.1| 953|Caenorhabditis elegans rabphilin
protein.
Length = 953
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 533 ERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPS 664
ER+ H NRL D +P+ ++ PRH L PS
Sbjct: 368 ERFSRHTHAHANRLYSTDDDDDSSPESRPSTRSTSPRHSLATPS 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,971,080
Number of Sequences: 27780
Number of extensions: 303635
Number of successful extensions: 759
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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