Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0987
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32170.1 68415.m03932 expressed protein ;supported by cDNA GI...    31   0.53 
At3g06070.1 68416.m00694 expressed protein                             28   6.5  
At1g15770.1 68414.m01892 expressed protein                             28   6.5  
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ...    27   8.6  

>At2g32170.1 68415.m03932 expressed protein ;supported by cDNA
           GI:20259498
          Length = 504

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 452 PDS*PAKAGL*GLEGVYVCAGRVSEHXTRVSHDGPYASFVKCHLVPKGH 306
           PD  PA AG+   EG  +C G   E     SH G + + V C  +   H
Sbjct: 361 PDIHPASAGI--TEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFIDTAH 407


>At3g06070.1 68416.m00694 expressed protein
          Length = 151

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 18  PRTVVPKMAHRHQPSEKYCGAISEGKLHTDFLPD*EEESHTPDYSL*TTHTLGQE 182
           PR+  P+  H H P +K      +G+    F+P  +   H  D +L T +   QE
Sbjct: 79  PRSSQPRRKHNHHPHQK-----KQGRFIGSFIPKQQFPHHGHDNNLTTLNNNNQE 128


>At1g15770.1 68414.m01892 expressed protein
          Length = 332

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 395 AGRVSEHXTRVSHDGPYASFVKCHLVPKGHFTPLTDHGVESTEN 264
           AG V    +R S      +  KCHL  +   T   DH  E+++N
Sbjct: 265 AGSVPGKGSRASFGVDLVAMTKCHLQERNFMTQDGDHEKEASDN 308


>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
           similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
           GI:7542336; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 572 LIVAAADYSPNPDHAGASHRRRPRH 646
           LIV AA +SPNPD   A+ +   +H
Sbjct: 8   LIVGAAAFSPNPDERRAAEQSLNQH 32


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,313,252
Number of Sequences: 28952
Number of extensions: 288574
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)