Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0986
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    29   0.27 
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   4.5  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   5.9  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   5.9  

>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 224 YLL*ACKFNYSRPSPMQRNYVNTVHWIKGFRCVYYAMYQRKV 99
           Y L   KFN      +QR Y+NT++W   +    Y+ +  KV
Sbjct: 179 YYLFLFKFNRKLALELQRAYINTMNWFYLYHFEQYSRFLDKV 220


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 99  SNKCFPLFNKKKTIH 55
           + KCF L NK+K++H
Sbjct: 409 ATKCFQLLNKQKSVH 423


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 268 IGCNVIGSTTSFKPSTYSKRANSIIQD 188
           +GC V+G+ T+     Y +R N I Q+
Sbjct: 431 LGCTVVGTLTATAMRFYLQRQNKIKQE 457


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 262 CNVIGSTTSFKPSTYSKRANSIIQ 191
           CN I  T +   +TYS R+++I+Q
Sbjct: 316 CNAIRKTAATDFNTYSSRSHAILQ 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,172
Number of Sequences: 5004
Number of extensions: 26011
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)