Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0986
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19...    30   1.1  
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901...    27   7.7  

>01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161,
            192248-192356,192401-192496,192724-193994,194200-194384,
            194619-195055,197034-197077,197830-199036,199253-199479
          Length = 1411

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = -2

Query: 212  ACKFNYSRPSPMQRNYVNTVHWIKGFRCVYYAMYQRKVLINVF 84
            AC   YSR SP+    V T HW K  R      Y R    N+F
Sbjct: 1160 ACDTPYSRASPIPEQEVCTAHW-KTSRSACDTPYSRNSPSNIF 1201


>03_02_0511 +
           9016215-9016425,9017292-9017365,9018399-9018609,
           9019235-9019263,9019646-9020798,9021022-9021251
          Length = 635

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -2

Query: 212 ACKFNYSRPSPMQRNYVNTVHWIKGFRCVYYAMYQRKVLINVF 84
           AC   YSR SP+    V T  W K  R      Y R    N+F
Sbjct: 384 ACDTPYSRASPIPEQEVPTAQW-KTSRSACDTPYSRNSPSNIF 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,488,390
Number of Sequences: 37544
Number of extensions: 131661
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)