Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0986
         (474 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.      30   1.8  
AY069554-1|AAL39699.1|  632|Drosophila melanogaster LD27895p pro...    30   1.8  
AJ238442-1|CAB41475.1|  537|Drosophila melanogaster TBP-like fac...    30   1.8  
AF136569-1|AAD28784.1|  632|Drosophila melanogaster TATA box bin...    30   1.8  
AE014298-1172|AAF46368.2|  632|Drosophila melanogaster CG18009-P...    30   1.8  
AE014298-1171|AAF46369.3|  632|Drosophila melanogaster CG18009-P...    30   1.8  
AE014296-352|AAS64934.1| 3966|Drosophila melanogaster CG15804-PB...    28   5.6  
AE014296-351|AAF47564.1| 3868|Drosophila melanogaster CG15804-PA...    28   5.6  

>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
          Length = 1715

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 122  SKHSESLLSNEPY*HNSVALDLVLNN*ICTLRVGTRLK 235
            S +++ +  ++P   N   LD+V+NN +C+  VG  LK
Sbjct: 1264 SNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLK 1301


>AY069554-1|AAL39699.1|  632|Drosophila melanogaster LD27895p
           protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 SKHSESLLSNEPY*HNSVALDLVLNN*ICTLRVGTRLK 235
           S +++ +  ++P   N   LD+V+NN +C+  VG  LK
Sbjct: 181 SNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLK 218


>AJ238442-1|CAB41475.1|  537|Drosophila melanogaster TBP-like factor
           protein.
          Length = 537

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 SKHSESLLSNEPY*HNSVALDLVLNN*ICTLRVGTRLK 235
           S +++ +  ++P   N   LD+V+NN +C+  VG  LK
Sbjct: 86  SNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLK 123


>AF136569-1|AAD28784.1|  632|Drosophila melanogaster TATA box
           binding protein-relatedfactor 2 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 SKHSESLLSNEPY*HNSVALDLVLNN*ICTLRVGTRLK 235
           S +++ +  ++P   N   LD+V+NN +C+  VG  LK
Sbjct: 181 SNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLK 218


>AE014298-1172|AAF46368.2|  632|Drosophila melanogaster CG18009-PD,
           isoform D protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 SKHSESLLSNEPY*HNSVALDLVLNN*ICTLRVGTRLK 235
           S +++ +  ++P   N   LD+V+NN +C+  VG  LK
Sbjct: 181 SNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLK 218


>AE014298-1171|AAF46369.3|  632|Drosophila melanogaster CG18009-PA,
           isoform A protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 122 SKHSESLLSNEPY*HNSVALDLVLNN*ICTLRVGTRLK 235
           S +++ +  ++P   N   LD+V+NN +C+  VG  LK
Sbjct: 181 SNNAKPIDLHQPIADNEHELDIVINNVVCSFSVGCHLK 218


>AE014296-352|AAS64934.1| 3966|Drosophila melanogaster CG15804-PB,
           isoform B protein.
          Length = 3966

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 173 RNYVNTVHWIKGFRCVYYAMY--QRKVLINVF 84
           R Y   + +++GFR  YYA+Y  Q +  +N F
Sbjct: 401 RTYQEVIQYVEGFRDKYYALYSWQERDALNQF 432


>AE014296-351|AAF47564.1| 3868|Drosophila melanogaster CG15804-PA,
           isoform A protein.
          Length = 3868

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 173 RNYVNTVHWIKGFRCVYYAMY--QRKVLINVF 84
           R Y   + +++GFR  YYA+Y  Q +  +N F
Sbjct: 401 RTYQEVIQYVEGFRDKYYALYSWQERDALNQF 432


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,209
Number of Sequences: 53049
Number of extensions: 250315
Number of successful extensions: 493
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)