Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0986
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006625-7|AAK68274.1|  346|Caenorhabditis elegans Hypothetical ...    29   2.3  
U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z80216-1|CAB02287.2|  338|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    27   5.2  
U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical p...    27   9.1  
AF040659-9|AAK39391.1|  344|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC006625-7|AAK68274.1|  346|Caenorhabditis elegans Hypothetical
           protein C55B7.3 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 147 DKRLSLCLLCNVPAQGSNKCFPLFNKKK 64
           DK   + +LCN+  +G+ KCF  F  KK
Sbjct: 143 DKVEYIFMLCNLLEKGARKCFEYFPSKK 170


>U23139-2|AAL02483.1|  460|Caenorhabditis elegans Hypothetical
           protein F13H8.11 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -3

Query: 277 NIFIG----CNVIGSTTSFKPSTYSKRANSII 194
           NIFIG    CN+  + T+F P T+ K  +S +
Sbjct: 186 NIFIGHNDLCNICNNETTFGPETFGKSLHSAL 217


>Z80216-1|CAB02287.2|  338|Caenorhabditis elegans Hypothetical
           protein F10G8.1 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 147 DKRLSLCLLCNVPAQGSNKCFPLFNKKK 64
           DK   + +LCN   +G+ KCF  F  KK
Sbjct: 143 DKVEYIFMLCNFLEKGAKKCFEYFPSKK 170


>Z70306-1|CAA94322.1|  355|Caenorhabditis elegans Hypothetical
           protein C06G8.1 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 158 TVHWIKGFRCVYYAMYQRKVLINVFRCLTKRKLYI 54
           TV W+ G + + Y  Y        + C+TK+KLYI
Sbjct: 72  TVKWVTGCQVILYTTYTI-----FYWCMTKKKLYI 101


>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
           protein F25G6.2 protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -1

Query: 234 LSLVPTLSVQIQLFKTKSNATELC*YGSLDKRLSLCLLCNVPAQGSNKCFPLFNKKKTIH 55
           L + P+LS+ I      +  TE+  +  L+    LCLL +   + S K F L NK    +
Sbjct: 44  LLIDPSLSISI----LDNFLTEMLEFAELNDSRILCLLVDFLLKASAKDFTLCNKTVERY 99

Query: 54  SFLIXKFHSI 25
           SF +    SI
Sbjct: 100 SFYLIPNKSI 109


>U80448-10|AAB37823.1|  482|Caenorhabditis elegans Hypothetical
           protein F59A3.9 protein.
          Length = 482

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 176 QRNYVNTVHWIKGFRCVYYAMYQRKVLINVFRCLTKRKL 60
           Q+NY+  +     FR  Y  + +RK + N+++C   RKL
Sbjct: 358 QQNYMERIQL--EFREEYERILKRKTIFNLYQCNWSRKL 394


>AF040659-9|AAK39391.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK484.7 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 135 SLCLLCNVPAQGSNKCFPLFN-KKKTIHSFLIXKFHSIVV 19
           S+ +LCN+  +G+ KC   F  K K +  F   K H I+V
Sbjct: 146 SIFMLCNIMEKGAKKCCDYFACKDKPVLEF-EEKGHKIIV 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,109,372
Number of Sequences: 27780
Number of extensions: 139951
Number of successful extensions: 310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)