Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0985
         (453 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    37   0.23 
UniRef50_UPI0000D9AE57 Cluster: PREDICTED: hypothetical protein;...    32   5.0  
UniRef50_A7NSY4 Cluster: Chromosome chr18 scaffold_1, whole geno...    31   8.7  
UniRef50_Q9P6Z0 Cluster: Putative uncharacterized protein 13E11....    31   8.7  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 36.7 bits (81), Expect = 0.23
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -1

Query: 318 AGWLYLPVRTHKRSYHR 268
           A W YLP RTHKRSYHR
Sbjct: 569 AEWWYLPARTHKRSYHR 585


>UniRef50_UPI0000D9AE57 Cluster: PREDICTED: hypothetical protein;
           n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
           - Macaca mulatta
          Length = 212

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -2

Query: 389 LSIATTAVPPF-KPKRITTSRQKSRRGGCT-YPCGLTRGPTTGSFLVEEC 246
           L+  T   PPF  P  +  +  + R  GC  +P  L RGP TG F    C
Sbjct: 115 LNTRTLPPPPFCLPLSVAAAALRCRFPGCGHFPASLARGPRTGGFCPPGC 164


>UniRef50_A7NSY4 Cluster: Chromosome chr18 scaffold_1, whole genome
           shotgun sequence; n=2; core eudicotyledons|Rep:
           Chromosome chr18 scaffold_1, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 867

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -3

Query: 322 HGGVVVPTRADSQEVLPPVAFLLKNATVVLLYYILHSSSNLYHQIHQSYTTDHM 161
           HGG  VP RA ++++ PP+ + ++  T  L+   LH  +  +  I++     H+
Sbjct: 160 HGGFSVPRRA-AEKLFPPLDYSMQPPTQELIVRDLHDITYTFRHIYRGQPKRHL 212


>UniRef50_Q9P6Z0 Cluster: Putative uncharacterized protein
           13E11.260; n=2; Sordariales|Rep: Putative
           uncharacterized protein 13E11.260 - Neurospora crassa
          Length = 935

 Score = 31.5 bits (68), Expect = 8.7
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -3

Query: 313 VVVPTRAD---SQEVLPPVAFLLKNATVVLLYYILHSSSNLYHQIHQSY 176
           +V+  R D   ++E +PP+A  +  A V+L +Y    SS L H+  Q+Y
Sbjct: 453 IVLGVRLDILGTEEAIPPIALWVAQALVLLEFYEKLYSSRLLHERAQTY 501


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,315,017
Number of Sequences: 1657284
Number of extensions: 8724963
Number of successful extensions: 19747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19736
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)