Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0985
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    30   0.14 
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    26   2.3  
SPBC428.03c |pho4||thiamine-repressible acid phosphatase Pho4|Sc...    25   5.4  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   7.2  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    24   9.5  

>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 30.3 bits (65), Expect = 0.14
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +1

Query: 136 LCADQL--SLPYGPWCMIDVSDDTSCYYCVIYSIAIRLSHSSTRKLPVVGPLV--SPHG 300
           LCA +   S  Y  +  +D ++D       +Y++    SH+ TRK PVV  +V  +PHG
Sbjct: 236 LCAPRTEGSFIYEEFMNVDNAEDVK-----VYTVGPHYSHAETRKSPVVDGIVRRNPHG 289


>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 14/66 (21%), Positives = 29/66 (43%)
 Frame = -3

Query: 403 ISSKVSV*LQRLYRPSNRNALLLHGRNHGGVVVPTRADSQEVLPPVAFLLKNATVVLLYY 224
           + S +    Q + +PS ++  +L+G    G++V       E+L    + L+    V+   
Sbjct: 33  LGSLIDYMAQIIEKPSQKDLFILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVS 92

Query: 223 ILHSSS 206
            LH  +
Sbjct: 93  TLHGKT 98


>SPBC428.03c |pho4||thiamine-repressible acid phosphatase
           Pho4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 142 ADQLSLPYGPWCMIDVSDDTSCYYCVIYSIAIR 240
           A++L+  +     + VSD  S YY  +Y IA+R
Sbjct: 239 ANRLNKYFDSGYNLTVSDVRSLYYICVYEIALR 271


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 310 VVPTRADSQEVLPPVAFLLKNATVVLLY 227
           + P+  D+Q  LP   ++LK  T ++LY
Sbjct: 347 IKPSTLDTQTQLPENTYVLKEETSMVLY 374


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
 Frame = -3

Query: 280 VLPPVAFL---LKNATVVLLYYILHSSSNLYHQI 188
           +L P+ F+   L++A  VLL+YI  +S+ +  Q+
Sbjct: 498 MLQPIFFICTYLESACTVLLFYIASNSAKIQGQL 531


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,376
Number of Sequences: 5004
Number of extensions: 39238
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)