Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0985
         (453 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0675 + 4937309-4937354,4937606-4937718,4937810-4937905,493...    31   0.33 
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    29   1.3  
07_03_0912 + 22544144-22545589                                         27   5.3  
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865           27   7.1  
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297           27   7.1  
01_06_1749 - 39636951-39638102                                         27   7.1  
01_01_0960 + 7546081-7546161,7546439-7546537,7546650-7546706,754...    27   9.3  

>06_01_0675 +
           4937309-4937354,4937606-4937718,4937810-4937905,
           4938003-4938059,4938145-4938300,4938402-4938486,
           4938727-4938817,4938896-4939060,4939150-4939345,
           4939593-4939731,4940187-4941874,4942575-4942765,
           4942850-4942994
          Length = 1055

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 322 HGGVVVPTRADSQEVLPPVAFLLKNATVVLLYYILHSSSNLYHQIHQSYTTDHM 161
           HGG  VP RA ++++ PP+ F ++     L+   LH  S  +  I++     H+
Sbjct: 139 HGGFSVPRRA-AEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHL 191


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 274 PPVAFLLKNATVVLLYYILHSSSNLYHQIHQ 182
           PP A ++ NA V   Y ILH S +L H+ +Q
Sbjct: 17  PPSAQVVGNAFVHQYYNILHQSPDLVHRFYQ 47


>07_03_0912 + 22544144-22545589
          Length = 481

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 370 LYRPSNRNALLLHGRNHGGVVVPTRADSQEVLP 272
           L R  +R   +L G   GGV  PT AD  E+LP
Sbjct: 291 LERSGHRFLWVLRGAPAGGVRYPTDADPGELLP 323


>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 377 TTAVPPFKPKRITTSRQKSRRGGCTYPCGLTRGPT 273
           + A P FKP+ +T   +     G   P GL  GPT
Sbjct: 36  SAAFPQFKPEEMTNIMKDFDEPGFLAPTGLFLGPT 70


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 377 TTAVPPFKPKRITTSRQKSRRGGCTYPCGLTRGPT 273
           + A P FKP+ +T   +     G   P GL  GPT
Sbjct: 36  SAAFPQFKPEEMTNIMKDFDEPGFLAPTGLFLGPT 70


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 386 SIATTAVPPFKPKRITT 336
           S+A+ A PPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>01_01_0960 +
           7546081-7546161,7546439-7546537,7546650-7546706,
           7547106-7547261,7547350-7547434,7547572-7547662,
           7547776-7547940,7548025-7548144,7548243-7548315,
           7548397-7548562,7548647-7549290,7550080-7550258,
           7550346-7550469
          Length = 679

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 322 HGGVVVPTRADSQEVLPPVAFLLKNATVVLLYYILHSSSNLYHQIHQSYTTDHM 161
           HGG  V  R  + E LPP+   +   T  L+   LH S   +  I++     H+
Sbjct: 114 HGGFSV-LRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYRGQPRRHL 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,052,703
Number of Sequences: 37544
Number of extensions: 237487
Number of successful extensions: 579
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)