Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0985
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21448| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_11096| Best HMM Match : Fz (HMM E-Value=0.00044)                    27   9.6  

>SB_21448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 543

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -3

Query: 241 VVLLYYILHSSSNLYHQIHQSYTTD 167
           + +LY++L+SS N+YH     +TTD
Sbjct: 456 ITVLYWLLNSSYNIYHFSALLFTTD 480


>SB_48319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 169  PWCMIDVSDDTSCYYCVIYSIAIRLSHSSTRKLPVVGPL 285
            PWC +  + D S  +C + S    L   +T+++  +GP+
Sbjct: 903  PWCCVFHTVDLSFSWCCLVSRGCCLGACTTQRIDNIGPI 941


>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 16  QKKYL*TGIVSYANVYGNKILIAHCCNTQ 102
           +K++    ++ +ANV G K L   CCNT+
Sbjct: 42  KKEHCDAAMLIFANVPGAKKLAVTCCNTE 70


>SB_11096| Best HMM Match : Fz (HMM E-Value=0.00044)
          Length = 918

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 103 LCFACXNN*FILCADQLSLPYGPW---CMIDVSDDTSCYYC 216
           LC +   +  + C + L+  YGPW   C +  S +TS  YC
Sbjct: 606 LCQSFCYDISVKCPEVLNTVYGPWLSGCELLASGNTSHGYC 646


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,491,489
Number of Sequences: 59808
Number of extensions: 289694
Number of successful extensions: 626
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)