Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0985
         (453 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   1.6  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   1.6  
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       23   6.7  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 416 DTLRYKF*GLSIATTAVPPFKPKRITTSRQKSRRGGCTY 300
           D  R+   G+S +TTA+      R+TT  +++   GC++
Sbjct: 386 DDFRHPCSGISGSTTAIGGSVFTRLTTVEEQNVSSGCSH 424


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 416 DTLRYKF*GLSIATTAVPPFKPKRITTSRQKSRRGGCTY 300
           D  R+   G+S +TTA+      R+TT  +++   GC++
Sbjct: 386 DDFRHPCSGISGSTTAIGGSVFTRLTTVEEQNVSSGCSH 424


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 6.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 381 SYNGCTALQTETHYY 337
           S N CT L   THYY
Sbjct: 215 SRNSCTQLWLITHYY 229


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,984
Number of Sequences: 2352
Number of extensions: 9882
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38694201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)