Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0985
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical...    28   3.7  
AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical ...    27   4.8  
Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H...    27   8.4  

>AL132949-24|CAB61102.1|  860|Caenorhabditis elegans Hypothetical
           protein Y53F4B.28 protein.
          Length = 860

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +2

Query: 32  ELEL*AMQTYTEIKFLSLTVVIPNCVLRAXIINSFYVQTSSAFHMVRGV 178
           ELE     T T + FL LT+V+  C +   ++  F + TS  +  + GV
Sbjct: 236 ELEEQRAITITSLPFLGLTIVVLTCFMLVTLVR-FPLYTSQHWQSIVGV 283


>AF000299-5|AAC47977.1|  335|Caenorhabditis elegans Hypothetical
           protein E03H12.3 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 91  CNTQLCFACXNN*FILCADQLSLPYGPWCMIDVSDDTSCYYCVIYSI-AIRLSHSST 258
           C  QL  +  N+   LC  +       +CM+   +D+SC  C IY++  I  S+S T
Sbjct: 64  CEPQLKTSTFNSCIDLCLSET------YCMLAFGNDSSCTLCDIYAVNKITQSNSIT 114


>Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 259 LLKNATVVLLYYILHSSSNL--YHQIHQSYTTDHM 161
           LL +A  V+LY+  HS   +   H I+Q YT   M
Sbjct: 140 LLNDAVTVVLYHSFHSMVRIGQAHLIYQDYTMSMM 174


>Z82086-5|CAB04992.2|  325|Caenorhabditis elegans Hypothetical
           protein ZK228.5 protein.
          Length = 325

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 283 EVLPPVAFLLKNATVV--LLYYILHSSSNLYHQIHQSYTTDHME 158
           + LP + F    A +   +L++++  S  LYH + QS  T+ ++
Sbjct: 190 KTLPSLCFAFMFALIFPQILFFVIRISWFLYHTVSQSQATNRLQ 233


>Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 259 LLKNATVVLLYYILHSSSNL--YHQIHQSYTTDHM 161
           LL +A  V+LY+  HS   +   H I+Q YT   M
Sbjct: 140 LLNDAVTVVLYHSFHSMVRIGQAHLIYQDYTMSMM 174


>AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H
           exchanger isoform 1 protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 259 LLKNATVVLLYYILHSSSNL--YHQIHQSYTTDHM 161
           LL +A  V+LY+  HS   +   H I+Q YT   M
Sbjct: 139 LLNDAVTVVLYHSFHSMVRIGQAHLIYQDYTMSMM 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,765,389
Number of Sequences: 27780
Number of extensions: 219923
Number of successful extensions: 490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)