Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0985
         (453 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19850.1 68414.m02490 transcription factor MONOPTEROS (MP) / ...    30   0.64 
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    30   0.64 
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    28   2.6  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    28   3.4  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    28   3.4  
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil...    27   5.9  
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil...    27   5.9  
At4g01610.2 68417.m00211 cathepsin B-like cysteine protease, put...    27   5.9  
At4g01610.1 68417.m00210 cathepsin B-like cysteine protease, put...    27   5.9  
At1g77830.1 68414.m09068 zinc finger (C3HC4-type RING finger) fa...    27   5.9  

>At1g19850.1 68414.m02490 transcription factor MONOPTEROS (MP) /
           auxin-responsive protein (IAA24) / auxin response factor
           5 (ARF5) identical to transcription factor MONOPTEROS
           (MP/IAA24/ARF5) SP:P93024 from [Arabidopsis thaliana]
          Length = 902

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = -3

Query: 322 HGGVVVPTRADSQEVLPPVAFLLKNATVVLLYYILHSSSNLYHQIHQSYTTDHM 161
           HGG  VP RA ++++ PP+ +  +  T  L+   LH ++  +  I++     H+
Sbjct: 170 HGGFSVPRRA-AEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHL 222


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -3

Query: 322 HGGVVVPTRADSQEVLPPVAFLLKNATVVLLYYILHSSSNLYHQIHQSYTTDHM 161
           HGG  VP RA ++++ PP+ F ++     ++   LH ++  +  I++     H+
Sbjct: 138 HGGFSVPRRA-AEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHL 190


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = +1

Query: 172  WCMIDVSDDTSCYYCVIYSIAIRLSHSSTRKLPVVGPLVSPH 297
            W +I+ +++   Y+  ++++  R++    +KL    P+  PH
Sbjct: 1240 WILIEDTENDYIYHSDLFTLTKRMARGEPQKLSFTVPIFEPH 1281


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -3

Query: 352 RNALLLHGRNHGGVVVPTRADSQEVLPPVAFLLKNATVVLLY 227
           RN   L GR HGG++  +   + E+L  +AF L NA+ ++LY
Sbjct: 15  RNKAALRGR-HGGMLAASFVLAVEILENLAF-LANASNLVLY 54


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -3

Query: 352 RNALLLHGRNHGGVVVPTRADSQEVLPPVAFLLKNATVVLLY 227
           RN   L GR HGG++  +   + E+L  +AF L NA+ ++LY
Sbjct: 19  RNKAALRGR-HGGMLAASFVLAVEILENLAF-LANASNLVLY 58


>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 460

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 286 QEVLP-PVAFLLKNATVVLLYYILHSSSNLYHQIHQ 182
           QE  P P A ++  A V   Y+ILH S  L H+ +Q
Sbjct: 4   QEASPSPGAEVVGRAFVEQYYHILHQSPGLVHRFYQ 39


>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           G3BP ras-GTPase-activating protein SH3-domain binding
           protein, Mus musculus, EMBL:MMU65313
          Length = 459

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 286 QEVLP-PVAFLLKNATVVLLYYILHSSSNLYHQIHQ 182
           QE  P P A ++  A V   Y+ILH S  L H+ +Q
Sbjct: 4   QEASPSPGAEVVGRAFVEQYYHILHQSPGLVHRFYQ 39


>At4g01610.2 68417.m00211 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -1

Query: 198 IIRYINHTPRTIWKAELVCT*NELIIXARKTQLGITTVSDKNFISVYVCIAHN 40
           I++ +N  P   WKA +    +   +   K  LG+     K+F+ V + ++H+
Sbjct: 47  IVKKVNENPNAGWKAAINDRFSNATVAEFKRLLGVKPTPKKHFLGVPI-VSHD 98


>At4g01610.1 68417.m00210 cathepsin B-like cysteine protease,
           putative similar to cathepsin B-like cysteine proteinase
           GI:609175 from [Nicotiana rustica]; contains an
           unusually short, 5nt exon
          Length = 359

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -1

Query: 198 IIRYINHTPRTIWKAELVCT*NELIIXARKTQLGITTVSDKNFISVYVCIAHN 40
           I++ +N  P   WKA +    +   +   K  LG+     K+F+ V + ++H+
Sbjct: 47  IVKKVNENPNAGWKAAINDRFSNATVAEFKRLLGVKPTPKKHFLGVPI-VSHD 98


>At1g77830.1 68414.m09068 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 185

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 249 MRQSYCYTIYYTVVATCIIRYINHTPR 169
           + ++ C  I+Y    TCI RY+ HTPR
Sbjct: 143 VHKTKCNHIFY---GTCISRYLLHTPR 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,925,519
Number of Sequences: 28952
Number of extensions: 195986
Number of successful extensions: 438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)