Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0984
(470 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.001
UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1; Gr... 34 1.8
UniRef50_Q7NF85 Cluster: Gll3641 protein; n=1; Gloeobacter viola... 33 2.4
UniRef50_Q0KIR5 Cluster: Putative uncharacterized protein; n=1; ... 33 3.2
UniRef50_Q8GW81 Cluster: Putative uncharacterized protein At4g16... 33 4.2
UniRef50_Q57TT5 Cluster: Putative uncharacterized protein; n=1; ... 32 5.5
UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12... 32 5.5
UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole... 32 7.3
UniRef50_Q2P5X4 Cluster: ISXo1 transposase; n=13; Proteobacteria... 32 7.3
UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1... 32 7.3
UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4; ... 31 9.7
>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
Bombycoidea|Rep: Putative uncharacterized protein -
Lonomia obliqua (Moth)
Length = 74
Score = 44.8 bits (101), Expect = 0.001
Identities = 21/44 (47%), Positives = 26/44 (59%)
Frame = +3
Query: 129 IYGTGGLLTPLVAPVLXXXXXXXXXXXXXXXXXXYYGNLVAGAL 260
IYGTGGLLTP+VAP+L YYGN+VAG++
Sbjct: 17 IYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSV 60
>UniRef50_Q0BU79 Cluster: Hypothetical cytosolic protein; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Hypothetical
cytosolic protein - Granulobacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1)
Length = 90
Score = 33.9 bits (74), Expect = 1.8
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 65 QKLKEHGA--SSCISGKRGRRCCNIWHWGSVDSISGSRAR 178
Q L+EHG S ++G+R RC N WH G D + R R
Sbjct: 42 QALREHGTFQGSMLAGRRILRC-NPWHQGGYDPVPAGRCR 80
>UniRef50_Q7NF85 Cluster: Gll3641 protein; n=1; Gloeobacter
violaceus|Rep: Gll3641 protein - Gloeobacter violaceus
Length = 269
Score = 33.5 bits (73), Expect = 2.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +2
Query: 119 RCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFSGRRIVSQLTAA 280
RC ++ + +D + GS F+ S G+ H R C + RRI L AA
Sbjct: 23 RCARLFRYLYLDRLGGSGEGFEASEQQGQAHRRFCRLVELAAQNRRIEPLLAAA 76
>UniRef50_Q0KIR5 Cluster: Putative uncharacterized protein; n=1;
Solanum demissum|Rep: Putative uncharacterized protein -
Solanum demissum (Wild potato)
Length = 189
Score = 33.1 bits (72), Expect = 3.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 336 DVENG*CLASPHGVGATMAAAVNCDTMRRPLNFRSMLVQQRLC 208
D + G C PH + + A++N T+ R ++F S++ RLC
Sbjct: 82 DADTGCCGVCPHIYLSILEASINSQTVSRSVSFESLIHLSRLC 124
>UniRef50_Q8GW81 Cluster: Putative uncharacterized protein
At4g16141; n=2; Arabidopsis thaliana|Rep: Putative
uncharacterized protein At4g16141 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 197
Score = 32.7 bits (71), Expect = 4.2
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -3
Query: 363 KTEKVRSWSDVENG*CLASPHGVGATMAAAVNCDTMRRPL 244
K E SDV+NG C +S G G T V+C T R PL
Sbjct: 11 KLESAGDSSDVDNGNCSSSGSG-GDTKKTCVDCGTSRTPL 49
>UniRef50_Q57TT5 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 394
Score = 32.3 bits (70), Expect = 5.5
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = +2
Query: 77 EHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSG---RKHSRCCTSILRKFS 247
E S ++G C N+ WG DS G ARF + S R CC ++
Sbjct: 323 EPSPHSYVTGVDASECSNLGEWGEDDS-DGGAARFVVGSKSSQMCRMCRECCGRLIA--L 379
Query: 248 GRRIVSQL 271
GRR+ +L
Sbjct: 380 GRRVAERL 387
>UniRef50_P28618 Cluster: Pyrrolidone-carboxylate peptidase; n=12;
Bacilli|Rep: Pyrrolidone-carboxylate peptidase -
Bacillus subtilis
Length = 215
Score = 32.3 bits (70), Expect = 5.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 44 LRIARREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSIS 163
L + R K+KEHG + +S G CN +G +D IS
Sbjct: 117 LPVKRMTAKMKEHGIPAAVSYTAGTFVCNYLFYGLMDHIS 156
>UniRef50_Q4TGD5 Cluster: Chromosome undetermined SCAF3766, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF3766,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 328
Score = 31.9 bits (69), Expect = 7.3
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 174 AREPLMESTDPQCHILQHRRPRLPLMQLE 88
A +PL T+P+ +LQ+RRP+L L L+
Sbjct: 5 AEQPLSLRTEPKLRVLQYRRPKLELQLLK 33
>UniRef50_Q2P5X4 Cluster: ISXo1 transposase; n=13;
Proteobacteria|Rep: ISXo1 transposase - Xanthomonas
oryzae pv. oryzae (strain MAFF 311018)
Length = 322
Score = 31.9 bits (69), Expect = 7.3
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 315 LASPHGVGATMAAAVNCDTMRRPLNFRS-MLVQQRLCFLPLFPLS*NRAREPLMEST 148
L HG+ A M AVN R+ + RS +V L P + +RAR+P M T
Sbjct: 110 LLETHGIAARMLEAVNAHLSRKGQSLRSGTIVDATLIAAPSSTKNADRARDPEMHQT 166
>UniRef50_O44565 Cluster: Laminin related. see also lmb-protein 1;
n=2; Caenorhabditis|Rep: Laminin related. see also
lmb-protein 1 - Caenorhabditis elegans
Length = 1067
Score = 31.9 bits (69), Expect = 7.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 92 SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 196
+C SG +G RC C HWGS + G+ R +GN
Sbjct: 973 NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009
>UniRef50_A5E6W6 Cluster: ATP-dependent rRNA helicase RRP3; n=4;
Saccharomycetaceae|Rep: ATP-dependent rRNA helicase RRP3
- Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 504
Score = 31.5 bits (68), Expect = 9.7
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -3
Query: 318 CLASPHGVGATMAAAVNCDTMRRPLNFRSMLVQQRLCFLPLFPL 187
CL SP+ + VN D+M+R + F +V R C L L L
Sbjct: 317 CLTSPNTKDTRLIQIVNLDSMKRVIIFTRTVVHTRRCCLMLLNL 360
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,413,926
Number of Sequences: 1657284
Number of extensions: 6975449
Number of successful extensions: 14989
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14987
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26030843530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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